RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 CDH26Q8IXH8 852 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 GAPTQ8N292 157 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 FAM71E2Q8N5Q1 922 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 RNF152Q8N8N0 203 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 OR1L1Q8NH94 360 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 CT45A3Q8NHU0 189 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 CYGBQ8WWM9 190 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 RBMXL1Q96E39 390 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 WWC2-AS2Q96NR7 200 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 HSPB9Q9BQS6 159 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 SELENOIQ9C0D9 397 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 BANF2Q9H503 90 aa8.68□□□□□ -1.02
CCDC88C-213ENST00000557455 TRBV5-7A0A0A0MS05 114 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 PNMA8CA0A1B0GUJ8 204 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 UBE2QL1A1L167 161 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 FAM90A10PA6NDY2 464 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 FAM90A7PA6NKC0 464 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 FAM90A23PA8MXZ1 464 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 SC5DO75845 299 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 ATP6V1G2O95670 118 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 IGHG4P01861 327 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 OR5H8P0DN80 308 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 SLC2A2P11168 524 aaPredicted RBP8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 MGMTP16455 207 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 RCC1P18754 421 aaPredicted RBP8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 FUT3P21217 361 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 MYF6P23409 242 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 CAPGP40121 348 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 VHLP40337 213 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 LUMP51884 338 aaPredicted RBP8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 TAS2R43P59537 309 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 CFHR3Q02985 330 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 ST3GAL4Q11206 333 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 DOC2BQ14184 412 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 LRRC36Q1X8D7 754 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 STEAP3Q658P3 488 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF485Q8NCK3 441 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 SETD9Q8NE22 299 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 GGHQ92820 318 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 KCTD7Q96MP8 289 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 TAF9BQ9HBM6 251 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 OR2S2Q9NQN1 319 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 KCNIP1Q9NZI2 227 aa8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF107Q9UII5 783 aaPredicted RBP8.67□□□□□ -1.02
CCDC88C-213ENST00000557455 TENM3Q9P273 2699 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 SEC14L6B5MCN3 397 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 LANCL1O43813 399 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 IGF1P05019 195 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 GLAP06280 429 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 VSIG8P0DPA2 414 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 PSMB8P28062 276 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 ADARB1P78563 741 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 LSAMPQ13449 338 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 MMDQ15546 238 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 MORN2Q502X0 79 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 DHRSXQ8N5I4 330 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 OR11H1Q8NG94 326 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 C4orf3Q8WVX3 66 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 DERL3Q96Q80 235 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 CHCHD6Q9BRQ6 235 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 ABHD14AQ9BUJ0 271 aa8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 MBNL3Q9NUK0 354 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-213ENST00000557455 EFCAB10A6NFE3 127 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 PDCD6O75340 191 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 NHLRC4P0CG21 123 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 CELP19835 753 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 ECI1P42126 302 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 GNMTQ14749 295 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 SIGIRRQ6IA17 410 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 TMEM65Q6PI78 240 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF554Q86TJ5 538 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 NKAIN3Q8N8D7 197 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 OR52L2PQ8NGH6 319 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 THRSPQ92748 146 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 FAM46BQ96A09 425 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 Q96M66 194 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 PRR25Q96S07 402 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF251Q9BRH9 671 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 UQCC2Q9BRT2 126 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 GHRLQ9UBU3 117 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 ZNF580Q9UK33 172 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 JPT1Q9UK76 154 aa8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 LSM4Q9Y4Z0 139 aaKnown RBP8.65□□□□□ -1.02
CCDC88C-213ENST00000557455 RYR3Q15413 4870 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 MYL12BO14950 172 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 RGS11O94810 467 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 CD1AP06126 327 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 MAPK3P27361 379 aaPredicted RBP8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 PPP1CCP36873 323 aaKnown RBP8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 WNT4P56705 351 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 ACTBP60709 375 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 HTD2P86397 168 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 FHL3Q13643 280 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 ZNF260Q3ZCT1 412 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 NKAPLQ5M9Q1 402 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 C5orf24Q7Z6I8 188 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 LYPD6Q86Y78 171 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 ODF3L1Q8IXM7 274 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 PACRGLQ8N7B6 248 aa8.64□□□□□ -1.03
CCDC88C-213ENST00000557455 MRPL30Q8TCC3 161 aaKnown RBP8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms