RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 LPAR5Q9H1C0 372 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 TAF9BQ9HBM6 251 aa8.19□□□□□ -1.1
CCDC88C-206ENST00000553437 KIAA2026Q5HYC2 2103 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 IGHV1-3A0A0C4DH29 117 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 SHISA3A0PJX4 238 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 SH2D7A6NKC9 451 aaPredicted RBP8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 FOXI3A8MTJ6 420 aaPredicted RBP8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 HSD17B6O14756 317 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 SPINT2O43291 252 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 SNRNP70P08621 437 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 CD28P10747 220 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 CALRP27797 417 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 RPL5P46777 297 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 GABARAPL2P60520 117 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 EBI3Q14213 229 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 P2RY14Q15391 338 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 C2orf68Q2NKX9 166 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 TMEM30BQ3MIR4 351 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 ABCA11PQ4W5N1 156 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 CT45A1Q5HYN5 189 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 TRAT1Q6PIZ9 186 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 SLC25A48Q6ZT89 311 aaKnown RBP8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 OR2W3Q7Z3T1 314 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 C6orf201Q7Z4U5 140 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 ZNF554Q86TJ5 538 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 SPARTQ8N0X7 666 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 OR10V1Q8NGI7 309 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 CT45A3Q8NHU0 189 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 AKR1E2Q96JD6 320 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 NEDD4LQ96PU5 975 aa8.18□□□□□ -1.1
CCDC88C-206ENST00000553437 TRAV1-2A0A0B4J238 106 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 TRDV1A0A1B0GX56 115 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 ADARB2-AS1A8MUL3 147 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 CCRL2O00421 344 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 LDLRAD4O15165 306 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 SOCS1O15524 211 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 FBXO24O75426 580 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 NAPSAO96009 420 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 GAPDHP04406 335 aaKnown RBP8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 CSF1P09603 554 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 ARSBP15848 533 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 BLVRBP30043 206 aaPredicted RBP8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 VDAC2P45880 294 aaPredicted RBP8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 REG1BP48304 166 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 ZNF137PP52743 207 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 TMEM50BP56557 158 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 CLDN12P56749 244 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 HMGN3Q15651 99 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 RAB11BQ15907 218 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 CNPY1Q3B7I2 92 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 C2orf76Q3KRA6 126 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 UBE2UQ5VVX9 321 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 STEAP3Q658P3 488 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 ZNF880Q6PDB4 577 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 PRR18Q8N4B5 295 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 OR51D1Q8NGF3 324 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 OR52L2PQ8NGH6 319 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 FAM110DQ8TAY7 271 aaPredicted RBP8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 YTHDF1Q9BYJ9 559 aaKnown RBP8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 PLGRKTQ9HBL7 147 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 VCX3AQ9NNX9 186 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 RAB9BQ9NP90 201 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 NDUFB11Q9NX14 153 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 GNG12Q9UBI6 72 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 V9GY05 133 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 WNK1Q9H4A3 2382 aa8.17□□□□□ -1.1
CCDC88C-206ENST00000553437 IGHV3-72A0A0B4J1Y9 119 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 M0QZK8 103 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 IGKV1D-33P01593 117 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 IGKV1-33P01594 117 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 LPLP06858 475 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 TMEM11P17152 192 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 HTD2P86397 168 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 PLA2G7Q13093 441 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 HNF4GQ14541 408 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 GNMTQ14749 295 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 MORN2Q502X0 79 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 TCTEX1D4Q5JR98 221 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 MOB3BQ86TA1 216 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 IZUMO1Q8IYV9 350 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 LYG1Q8N1E2 194 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 SVOPQ8N4V2 548 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 Q8N6K4 173 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 C5orf56Q8N8D9 126 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 RTN4IP1Q8WWV3 396 aaPredicted RBP8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 FAM3DQ96BQ1 224 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 CITED2Q99967 270 aaPredicted RBP8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 URM1Q9BTM9 101 aaKnown RBP8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 OR2S2Q9NQN1 319 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 KCNIP1Q9NZI2 227 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 JPT1Q9UK76 154 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 MOB4Q9Y3A3 225 aa8.16□□□□□ -1.1
CCDC88C-206ENST00000553437 TRBV6-6A0A0A6YYG2 114 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 TMEM272A0A1B0GTI8 110 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 ZNF736B4DX44 427 aaPredicted RBP8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 FGF16O43320 207 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 YPEL1O60688 119 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 GALP22466 123 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 IL3RAP26951 378 aa8.15□□□□□ -1.1
CCDC88C-206ENST00000553437 CD1BP29016 333 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms