RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 OR2S2Q9NQN1 319 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 ABCB10Q9NRK6 738 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 ELF5Q9UKW6 265 aaPredicted RBP11.38□□□□□ -0.59
PTCH1-226ENST00000553011 ETV7Q9Y603 341 aa11.38□□□□□ -0.59
PTCH1-226ENST00000553011 PPP1CCP36873 323 aaKnown RBP11.37□□□□□ -0.59
PTCH1-226ENST00000553011 CEACAM3P40198 252 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 SCAND1P57086 179 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 HLA-DRB3P79483 266 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 RELBQ01201 579 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 DIAPH2-AS1Q14236 149 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 TMEM30BQ3MIR4 351 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 CDNFQ49AH0 187 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 CROCCP3Q8IVE0 287 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 LINC00311Q8N616 119 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 ZNF439Q8NDP4 499 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 OR10X1Q8NGY0 326 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 IL1F10Q8WWZ1 152 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 SLC25A46Q96AG3 418 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 CREB3L1Q96BA8 519 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 C1RLQ9NZP8 487 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 ABRACLQ9P1F3 81 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 SPATA2Q9UM82 520 aa11.37□□□□□ -0.59
PTCH1-226ENST00000553011 AMMECR1Q9Y4X0 333 aaPredicted RBP11.37□□□□□ -0.59
PTCH1-226ENST00000553011 CRYBA1P05813 215 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 FCGR3AP08637 254 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 ZNF134P52741 427 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 MRPS15P82914 257 aaKnown RBP11.36□□□□□ -0.59
PTCH1-226ENST00000553011 HTD2P86397 168 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 MADCAM1Q13477 382 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 Q3ZCU0 254 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 MORN2Q502X0 79 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 CT45A1Q5HYN5 189 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 CCBE1Q6UXH8 406 aaPredicted RBP11.36□□□□□ -0.59
PTCH1-226ENST00000553011 C8orf31Q8N9H6 132 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 CT45A3Q8NHU0 189 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 TOMM40LQ969M1 308 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 RPEQ96AT9 228 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 GALMQ96C23 342 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 OCSTAMPQ9BR26 566 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 JPT1Q9UK76 154 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 TCF19Q9Y242 345 aa11.36□□□□□ -0.59
PTCH1-226ENST00000553011 TMEM235A6NFC5 223 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 SERPINE3A8MV23 424 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 OOSP1A8MZH6 123 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 CHST1O43916 411 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 TMEM127O75204 238 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 SCTP09683 121 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 CD24P25063 80 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 RPL5P46777 297 aaKnown RBP11.35□□□□□ -0.59
PTCH1-226ENST00000553011 DYNLT3P51808 116 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 ARFRP1Q13795 201 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 DHRS7BQ6IAN0 325 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-226ENST00000553011 SLC25A48Q6ZT89 311 aaKnown RBP11.35□□□□□ -0.59
PTCH1-226ENST00000553011 TMEM219Q86XT9 240 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 CLVS1Q8IUQ0 354 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-226ENST00000553011 IZUMO1Q8IYV9 350 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 SPATA3Q8NHX4 192 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 MAFIPQ8WZ33 124 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 DCSTAMPQ9H295 470 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.35□□□□□ -0.59
PTCH1-226ENST00000553011 ZNF230Q9UIE0 474 aaPredicted RBP11.35□□□□□ -0.59
PTCH1-226ENST00000553011 MGAT4AQ9UM21 535 aa11.35□□□□□ -0.59
PTCH1-226ENST00000553011 TRAV18A0A075B6X5 111 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 IGKV1-6A0A0C4DH72 117 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 A0A1W2PPI3 338 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 A6NDX4 124 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 POM121CA8CG34 1229 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 TRDCB7Z8K6 153 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 YPEL1O60688 119 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 SCGNO76038 276 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 GSTP1P09211 210 aaKnown RBP11.34□□□□□ -0.59
PTCH1-226ENST00000553011 REG1BP48304 166 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 COMPP49747 757 aaPredicted RBP11.34□□□□□ -0.59
PTCH1-226ENST00000553011 RAG2P55895 527 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 RPL15P61313 204 aaKnown RBP11.34□□□□□ -0.59
PTCH1-226ENST00000553011 ARL6IP1Q15041 203 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 ZNF260Q3ZCT1 412 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 FBLN7Q53RD9 439 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 AWAT1Q58HT5 328 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 HACD4Q5VWC8 232 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 CCDC144NLQ6NUI1 221 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 SAMD12Q8N8I0 201 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 NUDCD2Q8WVJ2 157 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 ST6GALNAC6Q969X2 333 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 YPEL2Q96QA6 119 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 PARP12Q9H0J9 701 aaKnown RBP11.34□□□□□ -0.59
PTCH1-226ENST00000553011 OR1A1Q9P1Q5 309 aa11.34□□□□□ -0.59
PTCH1-226ENST00000553011 HSD17B6O14756 317 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 TIMM23O14925 209 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 RGS11O94810 467 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 NDUFA7O95182 113 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 MDKP21741 143 aaPredicted RBP11.33□□□□□ -0.6
PTCH1-226ENST00000553011 IL3RAP26951 378 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 BRS3P32247 399 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 TALDO1P37837 337 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 MNDAP41218 407 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 FOXL1Q12952 345 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 HERPUD1Q15011 391 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 STEAP3Q658P3 488 aa11.33□□□□□ -0.6
PTCH1-226ENST00000553011 C12orf54Q6X4T0 127 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms