RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 NARFLQ9H6Q4 476 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 METTL8Q9H825 291 aaKnown RBP7.85□□□□□ -1.15
LIMA1-211ENST00000552338 MMP26Q9NRE1 261 aa7.85□□□□□ -1.15
LIMA1-211ENST00000552338 TRAV39A0A0B4J263 110 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 CENPXA8MT69 81 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 LYRM1O43325 122 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 MMP23AO75900 390 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 RGS11O94810 467 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 FCER2P06734 321 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 CCL3L1P16619 93 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 HLA-DMAP28067 261 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 ECI1P42126 302 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 OR3A3P47888 321 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 ZNF137PP52743 207 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 ARPC4P59998 168 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 ERVFRD-1P60508 538 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 SURF2Q15527 256 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-211ENST00000552338 AADACL3Q5VUY0 350 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 BTNL3Q6UXE8 466 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 TMEM17Q86X19 198 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 FAM185AQ8N0U4 392 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 OR11H6Q8NGC7 330 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 OR6F1Q8NGZ6 308 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 OR1L1Q8NH94 360 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 OR10J5Q8NHC4 309 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 TERB2Q8NHR7 220 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 MAFIPQ8WZ33 124 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 TMEM186Q96B77 213 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 MSI2Q96DH6 328 aaKnown RBP7.84□□□□□ -1.15
LIMA1-211ENST00000552338 SLC6A7Q99884 636 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 PRRT1Q99946 306 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 SLC25A21Q9BQT8 299 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-211ENST00000552338 TINAGL1Q9GZM7 467 aaPredicted RBP7.84□□□□□ -1.15
LIMA1-211ENST00000552338 ABCB10Q9NRK6 738 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 COPZ2Q9P299 210 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 OR2W1Q9Y3N9 320 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 SESN1Q9Y6P5 492 aa7.84□□□□□ -1.15
LIMA1-211ENST00000552338 CSMD1Q96PZ7 3565 aa7.84□□□□□ -1.16
LIMA1-211ENST00000552338 ASH1LQ9NR48 2969 aaKnown RBP7.83□□□□□ -1.16
LIMA1-211ENST00000552338 DISC1C4P0D8 188 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 SLC22A5O76082 557 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 IGLV1-47P01700 117 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 PMP2P02689 132 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 FOSL1P15407 271 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 RFX2P48378 723 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 MECP2P51608 486 aaKnown RBP7.83□□□□□ -1.16
LIMA1-211ENST00000552338 DEFA1P59665 94 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 DEFA3P59666 94 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 LCN2P80188 198 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 PLA1AQ53H76 456 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF57Q68EA5 555 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-211ENST00000552338 CYB5R2Q6BCY4 276 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 HCP5Q6MZN7 132 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 SLC25A48Q6ZT89 311 aaKnown RBP7.83□□□□□ -1.16
LIMA1-211ENST00000552338 C5orf24Q7Z6I8 188 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 BEND2Q8NDZ0 799 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 OR4D10Q8NGI6 311 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 OR13C8Q8NGS7 320 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 RFESDQ8TAC1 157 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 EDARADDQ8WWZ3 215 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 MRGPRFQ96AM1 343 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 UPRTQ96BW1 309 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 MOB3AQ96BX8 217 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 C11orf54Q9H0W9 315 aaPredicted RBP7.83□□□□□ -1.16
LIMA1-211ENST00000552338 TMEM133Q9H2Q1 129 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 HEXA-AS1Q9H8Q6 139 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 OR2S2Q9NQN1 319 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 ING3Q9NXR8 418 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 EHFQ9NZC4 300 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 SCP2D1Q9UJQ7 156 aa7.83□□□□□ -1.16
LIMA1-211ENST00000552338 SDCBPO00560 298 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-211ENST00000552338 PPYP01298 95 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 IFNA6P05013 189 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 CEACAM6P40199 344 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 INPP1P49441 399 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 RAB7AP51149 207 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF134P52741 427 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 RAG2P55895 527 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 BPIFB3P59826 476 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 ARF6P62330 175 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 TUSC1Q2TAM9 212 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 RNASE12Q5GAN4 147 aaKnown RBP7.82□□□□□ -1.16
LIMA1-211ENST00000552338 NCR3LG1Q68D85 454 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF626Q68DY1 528 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 FAM71F2Q6NXP2 309 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 MZT2BQ6NZ67 158 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 LPCAT3Q6P1A2 487 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 C16orf87Q6PH81 154 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 LDLRAD3Q86YD5 345 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 ZDHHC22Q8N966 263 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF436-AS1Q8NC38 126 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-211ENST00000552338 ZBTB34Q8NCN2 500 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 CCDC168Q8NDH2 2452 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 OR52L2PQ8NGH6 319 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 OR9G1Q8NH87 305 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 ST6GALNAC6Q969X2 333 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 ZNF486Q96H40 463 aaPredicted RBP7.82□□□□□ -1.16
LIMA1-211ENST00000552338 AKR1E2Q96JD6 320 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 TBX15Q96SF7 602 aa7.82□□□□□ -1.16
LIMA1-211ENST00000552338 TMPRSS13Q9BYE2 586 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms