RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 POM121L2Q96KW2 1035 aa12.77□□□□□ -0.36
USP28-214ENST00000545540 FOLR2P14207 255 aa12.77□□□□□ -0.37
USP28-214ENST00000545540 SSPNQ14714 243 aa12.77□□□□□ -0.37
USP28-214ENST00000545540 MDP1Q86V88 176 aa12.77□□□□□ -0.37
USP28-214ENST00000545540 SPIN2AQ99865 258 aa12.77□□□□□ -0.37
USP28-214ENST00000545540 SPIN2BQ9BPZ2 258 aa12.77□□□□□ -0.37
USP28-214ENST00000545540 OR2J1Q9GZK6 312 aa12.77□□□□□ -0.37
USP28-214ENST00000545540 WNT9BO14905 357 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 RAB5CP51148 216 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 DUSP3P51452 185 aaPredicted RBP12.76□□□□□ -0.37
USP28-214ENST00000545540 CTAG1AP78358 180 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 ZNF816Q0VGE8 651 aaPredicted RBP12.76□□□□□ -0.37
USP28-214ENST00000545540 BTNL3Q6UXE8 466 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 RFESDQ8TAC1 157 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 OR2W1Q9Y3N9 320 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 TPRP12270 2363 aaKnown RBP12.76□□□□□ -0.37
USP28-214ENST00000545540 PCNX1Q96RV3 2341 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 DEFB108AA8MXU0 73 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 RAMP3O60896 148 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 LYZL6O75951 148 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 LY86O95711 162 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 ZNF324BQ6AW86 544 aaPredicted RBP12.76□□□□□ -0.37
USP28-214ENST00000545540 STX12Q86Y82 276 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 CCDC54Q8NEL0 328 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 MUCL1Q96DR8 90 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 PLSCR2Q9NRY7 297 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 UFSP2Q9NUQ7 469 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 IFITM10A6NMD0 228 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 AP4M1O00189 453 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 DNPH1O43598 174 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 SOX15O60248 233 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 CER1O95813 267 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 CEACAM6P40199 344 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 CLN3Q13286 438 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 TESK1Q15569 626 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 HEPN1Q6WQI6 88 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 WDR86Q86TI4 376 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 EDARADDQ8WWZ3 215 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 OR5P3Q8WZ94 311 aa12.76□□□□□ -0.37
USP28-214ENST00000545540 IGHV3-43A0A0B4J1X8 118 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 KIR2DS1A0A191URI9 304 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 IGKV1-5P01602 117 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 IGHV3-43DP0DP04 118 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 LMO1P25800 156 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 APLNRP35414 380 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 KIR2DS4P43632 304 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 KIR2DS1Q14954 304 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 AURKAIP1Q9NWT8 199 aaPredicted RBP12.75□□□□□ -0.37
USP28-214ENST00000545540 PSENENQ9NZ42 101 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 DOK5Q9P104 306 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 IGHV2-5P01817 119 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 ELOBQ15370 118 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 RHEBQ15382 184 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 ZNF726P1Q15940 193 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 FAM209BQ5JX69 171 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 WDR25Q64LD2 544 aaPredicted RBP12.75□□□□□ -0.37
USP28-214ENST00000545540 HAPLN4Q86UW8 402 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 LILRB2Q8N423 598 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 CLDND2Q8NHS1 167 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 GATAD1Q8WUU5 269 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 ATP5SQ99766 215 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 NIPSNAP3BQ9BS92 247 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 ZNF391Q9UJN7 358 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 ARFGEF3Q5TH69 2177 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 UBE2L5PA0A1B0GUS4 154 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 CEBPZOSA8MTT3 80 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 IL18BPO95998 194 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 IGLV2-14P01704 120 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 COMMD1Q8N668 190 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 WDYHV1Q96HA8 205 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 FAM173AQ9BQD7 235 aa12.75□□□□□ -0.37
USP28-214ENST00000545540 OR2H2O95918 312 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 IFNA5P01569 189 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 RNF212Q495C1 297 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 RNFT1Q5M7Z0 435 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 DHRS13Q6UX07 377 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 OR10V1Q8NGI7 309 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 GPR61Q9BZJ8 451 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 COLQQ9Y215 455 aaPredicted RBP12.74□□□□□ -0.37
USP28-214ENST00000545540 KALRNO60229 2985 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 RBMXL2O75526 392 aaKnown RBP12.74□□□□□ -0.37
USP28-214ENST00000545540 AGFG2O95081 481 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 TUBG1P23258 451 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 TAAR9Q96RI9 348 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 GALR2O43603 387 aaPredicted RBP12.74□□□□□ -0.37
USP28-214ENST00000545540 G6PCP35575 357 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 SRPXP78539 464 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 TRA2AQ13595 282 aaKnown RBP eCLIP12.74□□□□□ -0.37
USP28-214ENST00000545540 ZNF787Q6DD87 383 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 SCGB1C1Q8TD33 95 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 FAM234AQ9H0X4 552 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 KIAA1456Q9P272 454 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 TINAGQ9UJW2 476 aa12.74□□□□□ -0.37
USP28-214ENST00000545540 NXPH2O95156 264 aa12.73□□□□□ -0.37
USP28-214ENST00000545540 CLDN1O95832 211 aa12.73□□□□□ -0.37
USP28-214ENST00000545540 IFNA17P01571 189 aa12.73□□□□□ -0.37
USP28-214ENST00000545540 EIF2S3P41091 472 aaKnown RBP12.73□□□□□ -0.37
USP28-214ENST00000545540 MEOX1P50221 254 aa12.73□□□□□ -0.37
USP28-214ENST00000545540 TAS2R30P59541 319 aa12.73□□□□□ -0.37
USP28-214ENST00000545540 DCAF10Q5QP82 559 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 249.9 ms