RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 KCNS2Q9ULS6 477 aa15.2■□□□□ 0.02
VIM-209ENST00000544301 RBM7Q9Y580 266 aaKnown RBP15.2■□□□□ 0.02
VIM-209ENST00000544301 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP15.19■□□□□ 0.02
VIM-209ENST00000544301 H7C2Y5 167 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 WNT9BO14905 357 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 PSPNO60542 156 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 WDR1O75083 606 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 PPP1CCP36873 323 aaKnown RBP15.19■□□□□ 0.02
VIM-209ENST00000544301 FIP1L1Q6UN15 594 aaKnown RBP15.19■□□□□ 0.02
VIM-209ENST00000544301 CXorf67Q86X51 503 aaPredicted RBP15.19■□□□□ 0.02
VIM-209ENST00000544301 ZNF295-AS1Q8N0V1 137 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 LSM10Q969L4 123 aaKnown RBP15.19■□□□□ 0.02
VIM-209ENST00000544301 AIFM2Q9BRQ8 373 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 PLSCR4Q9NRQ2 329 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 EP300Q09472 2414 aaPredicted RBP15.19■□□□□ 0.02
VIM-209ENST00000544301 C1QTNF9BB2RNN3 333 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 CECR9P0C854 216 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 ZNF585BQ52M93 769 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 RNASE11Q8TAA1 199 aaKnown RBP15.19■□□□□ 0.02
VIM-209ENST00000544301 ABHD14AQ9BUJ0 271 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 CXXC4Q9H2H0 198 aa15.19■□□□□ 0.02
VIM-209ENST00000544301 UMAD1C9J7I0 102 aa15.18■□□□□ 0.02
VIM-209ENST00000544301 IGKV1-5P01602 117 aa15.18■□□□□ 0.02
VIM-209ENST00000544301 FLI1Q01543 452 aaPredicted RBP15.18■□□□□ 0.02
VIM-209ENST00000544301 CACNG5Q9UF02 275 aa15.18■□□□□ 0.02
VIM-209ENST00000544301 A0A1B0GV50 99 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 TMEM30CPA0ZSE6 113 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 HOXA4Q00056 320 aaPredicted RBP15.17■□□□□ 0.02
VIM-209ENST00000544301 Q6ZR03 302 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 DRAM1Q8N682 238 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 LFNGQ8NES3 379 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 OR10Z1Q8NGY1 313 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 ATP5SQ99766 215 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 LIN7CQ9NUP9 197 aaKnown RBP15.17■□□□□ 0.02
VIM-209ENST00000544301 FZR1Q9UM11 496 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 AHRRA9YTQ3 701 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 TXNL1O43396 289 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 TIMM8AO60220 97 aaPredicted RBP15.17■□□□□ 0.02
VIM-209ENST00000544301 ZNF16P17020 682 aaPredicted RBP15.17■□□□□ 0.02
VIM-209ENST00000544301 KITLGP21583 273 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 RPL23AP62750 156 aaKnown RBP15.17■□□□□ 0.02
VIM-209ENST00000544301 IGF2-ASQ6U949 168 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 ZNF610Q8N9Z0 462 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 GNPNAT1Q96EK6 184 aaPredicted RBP15.17■□□□□ 0.02
VIM-209ENST00000544301 TAAR6Q96RI8 345 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 RAB40CQ96S21 281 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 PBDC1Q9BVG4 233 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 KCNIP1Q9NZI2 227 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 DKK4Q9UBT3 224 aa15.17■□□□□ 0.02
VIM-209ENST00000544301 CACNA1GO43497 2377 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 A0A1B0GW64 132 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 H3BP45 60 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 TNFSF13O75888 250 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 IGLV1-44P01699 117 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 TUBG1P23258 451 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 PRAMEF6Q5VXH4 476 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 ACP7Q6ZNF0 438 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 STX12Q86Y82 276 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 OR1L1Q8NH94 360 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 OPN3Q9H1Y3 402 aaPredicted RBP15.16■□□□□ 0.02
VIM-209ENST00000544301 TUBG2Q9NRH3 451 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 DSPP15924 2871 aaKnown RBP15.16■□□□□ 0.02
VIM-209ENST00000544301 CFAP47Q6ZTR5 3102 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 CEACAM4O75871 244 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 CEACAM1P13688 526 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 CD200P41217 278 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 SULT1A1P50225 295 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 FABP6P51161 128 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 RUNX1Q01196 453 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 SLC35E4Q6ICL7 350 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 WDR82Q6UXN9 313 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 ETV3LQ6ZN32 361 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 STARD4Q96DR4 205 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 BCL2L14Q9BZR8 327 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 ZNF71Q9NQZ8 489 aaPredicted RBP15.16■□□□□ 0.02
VIM-209ENST00000544301 FBXO7Q9Y3I1 522 aa15.16■□□□□ 0.02
VIM-209ENST00000544301 A6NLC8 198 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 C12orf77C9JDV5 145 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 GPR37O15354 613 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 TSPAN9O75954 239 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 CGAP01215 116 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 OR3A1P47881 315 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 CCL20P78556 96 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 AESQ08117 197 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 TMEM267Q0VDI3 215 aaPredicted RBP15.15■□□□□ 0.02
VIM-209ENST00000544301 SPSB3Q6PJ21 355 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 GALMQ96C23 342 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 MSL2Q9HCI7 577 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 MLXQ9UH92 298 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 PROCRQ9UNN8 238 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 WSB1Q9Y6I7 421 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 GTF3C1Q12789 2109 aa15.15■□□□□ 0.02
VIM-209ENST00000544301 IGHV2OR16-5A0A0B4J2B6 119 aa15.14■□□□□ 0.01
VIM-209ENST00000544301 IGHV1-18A0A0C4DH31 117 aa15.14■□□□□ 0.01
VIM-209ENST00000544301 TFF1P04155 84 aa15.14■□□□□ 0.01
VIM-209ENST00000544301 ZNF718Q3SXZ3 478 aa15.14■□□□□ 0.01
VIM-209ENST00000544301 AKIRIN2Q53H80 203 aa15.14■□□□□ 0.01
VIM-209ENST00000544301 PRR7Q8TB68 274 aa15.14■□□□□ 0.01
VIM-209ENST00000544301 SLC35B3Q9H1N7 401 aa15.14■□□□□ 0.01
VIM-209ENST00000544301 SMCO4Q9NRQ5 59 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms