RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 VCX3BQ9H321 246 aa8.89□□□□□ -0.99
VPS28-214ENST00000531032 SPACA1Q9HBV2 294 aa8.89□□□□□ -0.99
VPS28-214ENST00000531032 SCN3BQ9NY72 215 aa8.89□□□□□ -0.99
VPS28-214ENST00000531032 PSORS1C1Q9UIG5 152 aa8.89□□□□□ -0.99
VPS28-214ENST00000531032 LSM4Q9Y4Z0 139 aaKnown RBP8.89□□□□□ -0.99
VPS28-214ENST00000531032 RYR3Q15413 4870 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 SPINT2O43291 252 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 IGF1P05019 195 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 CELP19835 753 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 FSTP19883 344 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 MAPK3P27361 379 aaPredicted RBP8.88□□□□□ -0.99
VPS28-214ENST00000531032 PSMB8P28062 276 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 VHLP40337 213 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 ZNF134P52741 427 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 F2RL1P55085 397 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 RAB25P57735 213 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 FHL3Q13643 280 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 CT45A1Q5HYN5 189 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 SYT6Q5T7P8 510 aaPredicted RBP8.88□□□□□ -0.99
VPS28-214ENST00000531032 C9orf66Q5T8R8 295 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 AWAT2Q6E213 333 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 GAPTQ8N292 157 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 CT45A3Q8NHU0 189 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 MYOZ3Q8TDC0 251 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 C4orf3Q8WVX3 66 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 MRPS24Q96EL2 167 aaKnown RBP8.88□□□□□ -0.99
VPS28-214ENST00000531032 PGLYRP3Q96LB9 341 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 OR14A2Q96R54 314 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 MND1Q9BWT6 205 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 RAB9BQ9NP90 201 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 GNG12Q9UBI6 72 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 TRAPPC2LQ9UL33 140 aa8.88□□□□□ -0.99
VPS28-214ENST00000531032 TRAV8-7A0A075B6U6 113 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 A0A1W2PPK0 400 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 MCRIP1C9JLW8 97 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 LANCL1O43813 399 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 SC5DO75845 299 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 HBZP02008 142 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 MAS1P04201 325 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 VDAC1P21796 283 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 SOX6P35712 828 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 AQP4P55087 323 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 RPS11P62280 158 aaKnown RBP eCLIP8.87□□□□□ -0.99
VPS28-214ENST00000531032 C6orf183Q5T699 404 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 STEAP3Q658P3 488 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 MUL1Q969V5 352 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 PLCXD1Q9NUJ7 323 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 ETAA1Q9NY74 926 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 SCOCQ9UIL1 159 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 MRPS28Q9Y2Q9 187 aaKnown RBP8.87□□□□□ -0.99
VPS28-214ENST00000531032 U3KQK5 164 aa8.87□□□□□ -0.99
VPS28-214ENST00000531032 TRBV5-7A0A0A0MS05 114 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 FAM90A10PA6NDY2 464 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 FAM90A7PA6NKC0 464 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 FAM90A23PA8MXZ1 464 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 PTGES3LE9PB15 166 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 CA11O75493 328 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 CDK1P06493 297 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 OR5H8P0DN80 308 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 LSAMPQ13449 338 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 NKAPLQ5M9Q1 402 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 RAB12Q6IQ22 244 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 TRAT1Q6PIZ9 186 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 GLIPR1L1Q6UWM5 242 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 PRR18Q8N4B5 295 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 NKAIN3Q8N8D7 197 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 ZNF485Q8NCK3 441 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 OR10V1Q8NGI7 309 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 OR4K15Q8NH41 348 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 OR1L1Q8NH94 360 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 FBLIM1Q8WUP2 373 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 RBMXL1Q96E39 390 aaKnown RBP8.86□□□□□ -0.99
VPS28-214ENST00000531032 KCTD7Q96MP8 289 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 PRR25Q96S07 402 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 CHCHD6Q9BRQ6 235 aa8.86□□□□□ -0.99
VPS28-214ENST00000531032 ZNF107Q9UII5 783 aaPredicted RBP8.86□□□□□ -0.99
VPS28-214ENST00000531032 SEC14L6B5MCN3 397 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 GLAP06280 429 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 SLC2A2P11168 524 aaPredicted RBP8.85□□□□□ -0.99
VPS28-214ENST00000531032 RCC1P18754 421 aaPredicted RBP8.85□□□□□ -0.99
VPS28-214ENST00000531032 PPIFP30405 207 aaKnown RBP8.85□□□□□ -0.99
VPS28-214ENST00000531032 ECI1P42126 302 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 DOC2BQ14184 412 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 MED22Q15528 200 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 MMDQ15546 238 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 C6orf141Q5SZD1 244 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 LAIR2Q6ISS4 152 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 ZNF554Q86TJ5 538 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 LYPD6Q86Y78 171 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 CDH26Q8IXH8 852 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 NANOGP1Q8N7R0 232 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 NRG4Q8WWG1 115 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 DERL3Q96Q80 235 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 TMED9Q9BVK6 235 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 MBNL3Q9NUK0 354 aaKnown RBP8.85□□□□□ -0.99
VPS28-214ENST00000531032 TPRKBQ9Y3C4 175 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 PEX16Q9Y5Y5 336 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 STAB2Q8WWQ8 2551 aa8.85□□□□□ -0.99
VPS28-214ENST00000531032 I3L521 148 aa8.84□□□□□ -0.99
VPS28-214ENST00000531032 CRTAPO75718 401 aaPredicted RBP8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms