RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 COQ3Q9NZJ6 369 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 CACNA1BQ00975 2339 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 KANTRA0A1W2PQU2 76 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 VSTM5A8MXK1 200 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 E7EQL1 145 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 C15orf65H3BRN8 121 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 CYB5R3P00387 301 aaPredicted RBP17.28■□□□□ 0.36
VPS28-209ENST00000528142 S100GP29377 79 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 S100A10P60903 97 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 CDSNQ15517 529 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 CR1LQ2VPA4 569 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 CLLU1Q5K131 121 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 OR52L2PQ8NGH6 319 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 GSX2Q9BZM3 304 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 PPP1R3CQ9UQK1 317 aa17.28■□□□□ 0.36
VPS28-209ENST00000528142 CFAP46Q8IYW2 2715 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 OR8U9P0C7N5 309 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 GRNP28799 593 aaKnown RBP17.27■□□□□ 0.36
VPS28-209ENST00000528142 CCL8P80075 99 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 EDDM3AQ14507 147 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 STUMQ69YW2 141 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 TRAT1Q6PIZ9 186 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 TGIF2LYQ8IUE0 185 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 ZNF695Q8IW36 515 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 ZNRF1Q8ND25 227 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 OR5D13Q8NGL4 314 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 OR8U1Q8NH10 309 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 LINC01560Q8TB33 94 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 SDSLQ96GA7 329 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 AQP10Q96PS8 301 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 DCTN5Q9BTE1 182 aa17.27■□□□□ 0.36
VPS28-209ENST00000528142 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP17.26■□□□□ 0.35
VPS28-209ENST00000528142 ODAMA1E959 279 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 MSGN1A6NI15 193 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 DEDDO75618 318 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 MBPP02686 304 aaPredicted RBP17.26■□□□□ 0.35
VPS28-209ENST00000528142 TNFRSF1AP19438 455 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 S100A1P23297 94 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 SSTR5P35346 364 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 ESCO2Q56NI9 601 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 FAM53AQ6NSI3 398 aaPredicted RBP17.26■□□□□ 0.35
VPS28-209ENST00000528142 NEUROG1Q92886 237 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 IL22RA2Q969J5 263 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 NDRG3Q9UGV2 375 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 DUXBA0A1W2PPF3 345 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 UBA52P62987 128 aaKnown RBP17.26■□□□□ 0.35
VPS28-209ENST00000528142 TLE1Q04724 770 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 GNMTQ14749 295 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 TEX36Q5VZQ5 186 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 ZCCHC24Q8N2G6 241 aaKnown RBP17.26■□□□□ 0.35
VPS28-209ENST00000528142 ZNF561Q8N587 486 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 OR52M1Q8NGK5 317 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 ST8SIA2Q92186 375 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 ARL11Q969Q4 196 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 DCAF16Q9NXF7 216 aa17.26■□□□□ 0.35
VPS28-209ENST00000528142 RBM7Q9Y580 266 aaKnown RBP17.26■□□□□ 0.35
VPS28-209ENST00000528142 LINC00862A6NCI5 91 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 SPDEFO95238 335 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 FAM209AQ5JX71 171 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 ALKAL2Q6UX46 152 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 FOXRED2Q8IWF2 684 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 OR4D5Q8NGN0 318 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 SCARB1Q8WTV0 552 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 RBPMSQ93062 196 aaKnown RBP17.25■□□□□ 0.35
VPS28-209ENST00000528142 FAM210AQ96ND0 272 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 ARPC5LQ9BPX5 153 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 NCOR1P1Q9H4R4 102 aa17.25■□□□□ 0.35
VPS28-209ENST00000528142 TUBAL3A6NHL2 446 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 CD3EP07766 207 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 GZMHP20718 246 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 P2RX3P56373 397 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 HTD2P86397 168 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 DRAM1Q8N682 238 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 OR51H1Q8NH63 302 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 PLCE1Q9P212 2302 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 K7EPK0 472 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 RLN2P04090 185 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 MUC1P15941 1255 aaPredicted RBP17.24■□□□□ 0.35
VPS28-209ENST00000528142 MST1LQ2TV78 715 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 NMSQ5H8A3 153 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 FAM71E2Q8N5Q1 922 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 RFESDQ8TAC1 157 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 PCNPQ8WW12 178 aaKnown RBP17.24■□□□□ 0.35
VPS28-209ENST00000528142 OR2S2Q9NQN1 319 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 KCNS2Q9ULS6 477 aa17.24■□□□□ 0.35
VPS28-209ENST00000528142 LSM5Q9Y4Y9 91 aaKnown RBP17.24■□□□□ 0.35
VPS28-209ENST00000528142 CLEC18AA5D8T8 446 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 SPINT2O43291 252 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 HKR1P10072 659 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 SELLP14151 372 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 IRF2P14316 349 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 VDAC1P21796 283 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 PPP1CCP36873 323 aaKnown RBP17.23■□□□□ 0.35
VPS28-209ENST00000528142 NUP62P37198 522 aaPredicted RBP17.23■□□□□ 0.35
VPS28-209ENST00000528142 EFNB3Q15768 340 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 ZNF645Q8N7E2 425 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 CLEC18CQ8NCF0 446 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 BBC3Q96PG8 261 aaPredicted RBP17.23■□□□□ 0.35
VPS28-209ENST00000528142 GAFA1Q96PS6 74 aa17.23■□□□□ 0.35
VPS28-209ENST00000528142 ZNF471Q9BX82 626 aaPredicted RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms