RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 UBTD1Q9HAC8 227 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 SEBOXQ9HB31 216 aaPredicted RBP15.77■□□□□ 0.12
VPS28-207ENST00000526977 DNAJB11Q9UBS4 358 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 TRAPPC2LQ9UL33 140 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 WIPI2Q9Y4P8 454 aa15.77■□□□□ 0.12
VPS28-207ENST00000526977 B3GALNT1O75752 331 aa15.77■□□□□ 0.11
VPS28-207ENST00000526977 IFNA21P01568 189 aa15.77■□□□□ 0.11
VPS28-207ENST00000526977 LYL1P12980 280 aa15.77■□□□□ 0.11
VPS28-207ENST00000526977 TLE4Q04727 773 aa15.77■□□□□ 0.11
VPS28-207ENST00000526977 RAB32Q13637 225 aa15.77■□□□□ 0.11
VPS28-207ENST00000526977 IAH1Q2TAA2 248 aaPredicted RBP15.77■□□□□ 0.11
VPS28-207ENST00000526977 ZNF818PQ6ZRF7 136 aa15.77■□□□□ 0.11
VPS28-207ENST00000526977 FAM185AQ8N0U4 392 aa15.77■□□□□ 0.11
VPS28-207ENST00000526977 C18orf12Q96KH6 178 aa15.77■□□□□ 0.11
VPS28-207ENST00000526977 MBNL3Q9NUK0 354 aaKnown RBP15.77■□□□□ 0.11
VPS28-207ENST00000526977 SPTAN1Q13813 2472 aaKnown RBP15.76■□□□□ 0.11
VPS28-207ENST00000526977 COL12A1Q99715 3063 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 CHD3Q12873 2000 aaKnown RBP15.76■□□□□ 0.11
VPS28-207ENST00000526977 RND3P61587 244 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 PRSS54Q6PEW0 395 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 MOB1BQ7L9L4 216 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 LYZL2Q7Z4W2 148 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 H1FOOQ8IZA3 346 aaPredicted RBP15.76■□□□□ 0.11
VPS28-207ENST00000526977 DCUN1D4Q92564 292 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 TP53RKQ96S44 253 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 CCL28Q9NRJ3 127 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 OR5AC2Q9NZP5 309 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 LAMP3Q9UQV4 416 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 ARFGEF3Q5TH69 2177 aa15.76■□□□□ 0.11
VPS28-207ENST00000526977 C3orf85A0A1B0GTC6 90 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.75■□□□□ 0.11
VPS28-207ENST00000526977 GPR31O00270 319 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 PHF1O43189 567 aaPredicted RBP15.75■□□□□ 0.11
VPS28-207ENST00000526977 COX6B1P14854 86 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 EGR1P18146 543 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 BOLLQ8N9W6 283 aaKnown RBP15.75■□□□□ 0.11
VPS28-207ENST00000526977 IL1F10Q8WWZ1 152 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 RRNAD1Q96FB5 475 aaKnown RBP15.75■□□□□ 0.11
VPS28-207ENST00000526977 OR2W1Q9Y3N9 320 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 IGHV1-69-2A0A0G2JMI3 117 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 CYB5R3P00387 301 aaPredicted RBP15.75■□□□□ 0.11
VPS28-207ENST00000526977 TFF1P04155 84 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 RAB14P61106 215 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 ESCO2Q56NI9 601 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 ALKAL2Q6UX46 152 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 TBC1D26Q86UD7 250 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 FAM219AQ8IW50 185 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 LGI3Q8N145 548 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 LHFPL5Q8TAF8 219 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 NEU4Q8WWR8 484 aaPredicted RBP15.75■□□□□ 0.11
VPS28-207ENST00000526977 CCL17Q92583 94 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 TMEM106BQ9NUM4 274 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 OR1A1Q9P1Q5 309 aa15.75■□□□□ 0.11
VPS28-207ENST00000526977 CACNA1DQ01668 2161 aa15.74■□□□□ 0.11
VPS28-207ENST00000526977 KANTRA0A1W2PQU2 76 aa15.74■□□□□ 0.11
VPS28-207ENST00000526977 NPIPB11E5RHQ5 1161 aa15.74■□□□□ 0.11
VPS28-207ENST00000526977 HSD17B6O14756 317 aa15.74■□□□□ 0.11
VPS28-207ENST00000526977 BCL2L11O43521 198 aa15.74■□□□□ 0.11
VPS28-207ENST00000526977 MUC1P15941 1255 aaPredicted RBP15.74■□□□□ 0.11
VPS28-207ENST00000526977 A1L4Q6 167 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 TMEM178BH3BS89 294 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 SPDEFO95238 335 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 PSG2P11465 335 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 PRDX2P32119 198 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 HFEQ30201 348 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 SCARB1Q8WTV0 552 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 GPHA2Q96T91 129 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 TAF9BQ9HBM6 251 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 METRNQ9UJH8 293 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 HMGN3Q15651 99 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 TEX36Q5VZQ5 186 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 SLC35E4Q6ICL7 350 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 PRR18Q8N4B5 295 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 OR1S1Q8NH92 325 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 TMEM222Q9H0R3 208 aa15.73■□□□□ 0.11
VPS28-207ENST00000526977 TMEM30CPA0ZSE6 113 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 HEXAP06865 529 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 COL10A1Q03692 680 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 AESQ08117 197 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 TGIF2LYQ8IUE0 185 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 CD177Q8N6Q3 437 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 UBALD1Q8TB05 177 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 ST8SIA2Q92186 375 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 PLEKHF2Q9H8W4 249 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 KIF25Q9UIL4 384 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 DYSFO75923 2080 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 TRAV38-1A0A0B4J264 116 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 OOEPA6NGQ2 149 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 OR3A1P47881 315 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 S100A10P60903 97 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 MRPS11P82912 194 aaKnown RBP15.72■□□□□ 0.11
VPS28-207ENST00000526977 CMTM1Q8IZ96 169 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 COQ2Q96H96 371 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 TMEM56Q96MV1 263 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 UBE2J1Q9Y385 318 aaPredicted RBP15.72■□□□□ 0.11
VPS28-207ENST00000526977 TMEM56-RWDD3S4R434 201 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 LRRK2Q5S007 2527 aa15.72■□□□□ 0.11
VPS28-207ENST00000526977 IGKV1D-17A0A075B6S4 117 aa15.71■□□□□ 0.11
VPS28-207ENST00000526977 PPIAL4EA0A075B759 164 aa15.71■□□□□ 0.11
VPS28-207ENST00000526977 MSGN1A6NI15 193 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms