RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 HRES1P13985 223 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 CFL1P23528 166 aaKnown RBP3.88□□□□□ -1.79
NUP54-215ENST00000514313 KRTAP5-9P26371 169 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 IFNGR2P38484 337 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 PSMB3P49720 205 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 DEFA6Q01524 100 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 SLC36A2Q495M3 483 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 NIT1Q86X76 327 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 LYPD1Q8N2G4 141 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 KCTD7Q96MP8 289 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 DUSP21Q9H596 190 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 C11orf49Q9H6J7 331 aa3.88□□□□□ -1.79
NUP54-215ENST00000514313 IGKV1D-17A0A075B6S4 117 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 IGKV1D-37A0A075B6S9 117 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 C4orf51C9J302 202 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 K7EQS6 105 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 STX10O60499 249 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 SH2D1AO60880 128 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 GABRA3P34903 492 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 MAGEA2P43356 314 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 KRTAP10-8P60410 259 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 DHRS2Q13268 280 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 AMMECR1LQ6DCA0 310 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 Q6ZRU5 148 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 LYZL2Q7Z4W2 148 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 LRP11Q86VZ4 500 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 PACRGQ96M98 296 aaPredicted RBP3.87□□□□□ -1.79
NUP54-215ENST00000514313 EBNA1BP2Q99848 306 aaKnown RBP3.87□□□□□ -1.79
NUP54-215ENST00000514313 SLC23A2Q9UGH3 650 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 LINC00588Q9Y4M8 146 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 RIMS2Q9UQ26 1411 aa3.87□□□□□ -1.79
NUP54-215ENST00000514313 TRBV24-1A0A075B6N3 115 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 H3BSA7 217 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 ZNF708P17019 499 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 ORM2P19652 201 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 BLVRAP53004 296 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 PDGFRLQ15198 375 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 C10orf91Q5T1B1 145 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 SCGB1D4Q6XE38 83 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 SLC37A2Q8TED4 501 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 CYGBQ8WWM9 190 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 PARVAQ9NVD7 372 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 ASF1BQ9NVP2 202 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 UBAP1Q9NZ09 502 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 USE1Q9NZ43 259 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 SNX10Q9Y5X0 201 aa3.86□□□□□ -1.79
NUP54-215ENST00000514313 LECT2O14960 151 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 EEF1E1O43324 174 aaKnown RBP3.85□□□□□ -1.79
NUP54-215ENST00000514313 HBZP02008 142 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 FBP1P09467 338 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 CD79BP40259 229 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 H2BFSP57053 126 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 ACTBP60709 375 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 DAD1P61803 113 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 ACTG1P63261 375 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 MLLT11Q13015 90 aaPredicted RBP3.85□□□□□ -1.79
NUP54-215ENST00000514313 BAMBIQ13145 260 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 APOFQ13790 326 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 ZNF141Q15928 474 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 MAPK14Q16539 360 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 WDR59Q6PJI9 974 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 OR10D3Q8NH80 312 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 ASB13Q8WXK3 278 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 BCL2L14Q9BZR8 327 aa3.85□□□□□ -1.79
NUP54-215ENST00000514313 GGTLC3B5MD39 225 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 LINC00614P0C842 121 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 OCM2P0CE71 109 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 UBE2IP63279 158 aaKnown RBP3.84□□□□□ -1.79
NUP54-215ENST00000514313 BSPH1Q075Z2 132 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 TSPAN31Q12999 210 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 DEFB134Q4QY38 66 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 LYPD6Q86Y78 171 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 EIF4E3Q8N5X7 224 aaKnown RBP3.84□□□□□ -1.79
NUP54-215ENST00000514313 LINC00304Q8N9R0 145 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 ERMNQ8TAM6 284 aa3.84□□□□□ -1.79
NUP54-215ENST00000514313 RTBDNQ9BSG5 229 aaPredicted RBP3.84□□□□□ -1.79
NUP54-215ENST00000514313 PRR14LQ5THK1 2151 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 SHANK1Q9Y566 2161 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 D6RAR5 112 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 CPSF4O95639 269 aaKnown RBP3.83□□□□□ -1.8
NUP54-215ENST00000514313 ATP5G1P05496 136 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 OR13C7P0DN81 318 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 CXCL3P19876 107 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 MIPP30301 263 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 PTRHD1Q6GMV3 140 aaKnown RBP3.83□□□□□ -1.8
NUP54-215ENST00000514313 OR51H1Q8NH63 302 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 HIST1H2BAQ96A08 127 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 ACY3Q96HD9 319 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 CDCA4Q9BXL8 241 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 ABCG5Q9H222 651 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 WASHC3Q9Y3C0 194 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 SSH2Q76I76 1423 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 CACNA1DQ01668 2161 aa3.83□□□□□ -1.8
NUP54-215ENST00000514313 H0Y980 276 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 PFDN6O15212 129 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 SSNA1O43805 119 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 TYMSP04818 313 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 CXCL2P19875 107 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 HPCAP84074 193 aa3.82□□□□□ -1.8
NUP54-215ENST00000514313 OR8G1Q15617 311 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms