RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 GMPPAQ96IJ6 420 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-204ENST00000501271 CDH20Q9HBT6 801 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 TREM2Q9NZC2 230 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 CACNG5Q9UF02 275 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 POLDIP2Q9Y2S7 368 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 A0A1W2PPE2 198 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 PCP4L1A6NKN8 68 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 J3QW42 95 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 NXPH2O95156 264 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 ARG1P05089 322 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 SLC25A6P12236 298 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 CEACAM1P13688 526 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 PTAFRP25105 342 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 CEBPDP49716 269 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-204ENST00000501271 SULT1A1P50225 295 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 HOXA4Q00056 320 aaPredicted RBP8.33□□□□□ -1.08
CLIP1-204ENST00000501271 STX12Q86Y82 276 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 Q8IYB0 196 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 TMEM178AQ8NBL3 297 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 CLCF1Q9UBD9 225 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 KCNS2Q9ULS6 477 aa8.33□□□□□ -1.08
CLIP1-204ENST00000501271 ZNF98A6NK75 572 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 WISP2O76076 250 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 MT-ND4LP03901 98 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 GRPP07492 148 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 TNFSF10P50591 281 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 TAS2R30P59541 319 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 RAB5BP61020 215 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 UBE2NP61088 152 aaKnown RBP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 PSG7Q13046 419 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 SRSF6Q13247 344 aaKnown RBP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 ZNF146Q15072 292 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 RHEBQ15382 184 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 HAGHQ16775 308 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 ZNF585BQ52M93 769 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 SOHLH1Q5JUK2 328 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 KRBOX4Q5JUW0 171 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 SHEQ5VZ18 495 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 OR1J1Q8NGS3 322 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 SFT2D1Q8WV19 159 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 TUBA4BQ9H853 241 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 MBNL3Q9NUK0 354 aaKnown RBP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 COA4Q9NYJ1 87 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 KIAA1456Q9P272 454 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 PUS1Q9Y606 427 aaKnown RBP eCLIP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 hCG_1809904A0A1W2PP81 198 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 A0A1W2PR64 198 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 A0A1W2PRV1 198 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 IQCF6A8MYZ5 107 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 WDR1O75083 606 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 CNOT4O95628 575 aaKnown RBP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 IAPPP10997 89 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 MPV17P39210 176 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 RPL23AP62750 156 aaKnown RBP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 MRPL49Q13405 166 aaKnown RBP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 AKR1C8PQ5T2L2 129 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 LSM10Q969L4 123 aaKnown RBP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 RAB40CQ96S21 281 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 SMDT1Q9H4I9 107 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 TMEM9BQ9NQ34 198 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 OR14J1Q9UGF5 321 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 RBM7Q9Y580 266 aaKnown RBP8.32□□□□□ -1.08
CLIP1-204ENST00000501271 WSB1Q9Y6I7 421 aa8.32□□□□□ -1.08
CLIP1-204ENST00000501271 BTBD17A6NE02 478 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 PSPNO60542 156 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 FBP1P09467 338 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 RAC2P15153 192 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 CEACAM6P40199 344 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 SOX8P57073 446 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 SNRPEP62304 92 aaKnown RBP8.31□□□□□ -1.08
CLIP1-204ENST00000501271 ARL16Q0P5N6 197 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 CHD3Q12873 2000 aaKnown RBP8.31□□□□□ -1.08
CLIP1-204ENST00000501271 ICAM4Q14773 271 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 GABRA6Q16445 453 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 RNF212Q495C1 297 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 USF3Q68DE3 2245 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 CXorf67Q86X51 503 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-204ENST00000501271 THNSL2Q86YJ6 484 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 IQCF2Q8IXL9 164 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 FAM24BQ8N5W8 94 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 DRAM1Q8N682 238 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 TRIB1Q96RU8 372 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 LIN7CQ9NUP9 197 aaKnown RBP8.31□□□□□ -1.08
CLIP1-204ENST00000501271 TINAGQ9UJW2 476 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 WIPI2Q9Y4P8 454 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 C1orf196B1AJZ1 125 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 SH2D1BO14796 132 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 WNT9BO14905 357 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 MLNRO43193 412 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 SYNGR2O43760 224 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 DFFBO76075 338 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 HAND1O96004 215 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 SRP19P09132 144 aaKnown RBP8.31□□□□□ -1.08
CLIP1-204ENST00000501271 TGFBR3Q03167 851 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 FAM53AQ6NSI3 398 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-204ENST00000501271 HAPLN4Q86UW8 402 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 KLF14Q8TD94 323 aaPredicted RBP8.31□□□□□ -1.08
CLIP1-204ENST00000501271 C12orf57Q99622 126 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 RSG1Q9BU20 258 aa8.31□□□□□ -1.08
CLIP1-204ENST00000501271 BCL2L14Q9BZR8 327 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms