RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, human

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD3-208	ENST00000497026	FUT1	P19526	365 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CHRNA7	P36544	502 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	RPL4	P36578	427 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CD200	P41217	278 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CX3CR1	P49238	355 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	SULT1A2	P50226	295 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ZNF83	P51522	516 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	IDH3G	P51553	393 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ATP1B3	P54709	279 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	UBE2M	P61081	183 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	RPL18	Q07020	188 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ST3GAL3	Q11203	375 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ZP4	Q12836	540 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	MEF2D	Q14814	521 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	JOSD1	Q15040	202 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CDK5R1	Q15078	307 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	IQCJ	Q1A5X6	159 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	C2orf68	Q2NKX9	166 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CEACAM16	Q2WEN9	425 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CHRFAM7A	Q494W8	412 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ZNF672	Q499Z4	452 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	LRRC37A5P	Q49AS3	106 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	MEST	Q5EB52	335 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	LY6G6F	Q5SQ64	297 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	DMKN	Q6E0U4	476 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	FAAP20	Q6NZ36	180 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	STEAP1B	Q6NZ63	245 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	DHRS11	Q6UWP2	260 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	UNQ6126/PRO20091	Q6UXV3	157 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ZNF620	Q6ZNG0	422 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	MEPCE	Q7L2J0	689 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	SSX7	Q7RTT5	188 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	TMED4	Q7Z7H5	227 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	LYG2	Q86SG7	212 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	UEVLD	Q8IX04	471 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	SYS1	Q8N2H4	156 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	LRRC18	Q8N456	261 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	TMEM229B	Q8NBD8	167 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	WFDC11	Q8NEX6	87 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	RNASEH2C	Q8TDP1	164 aa	Known RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	WIPF2	Q8TF74	440 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	PPP1R1C	Q8WVI7	109 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	TMEM239	Q8WW34	195 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	LIPH	Q8WWY8	451 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CORO2A	Q92828	525 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	BCL2L2	Q92843	193 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	MUCL1	Q96DR8	90 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	SLC25A38	Q96DW6	304 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	AKR1E2	Q96JD6	320 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	C4orf36	Q96KX1	117 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	INTS14	Q96SY0	518 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CCL19	Q99731	98 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	TMEM208	Q9BTX3	173 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	NMES1	Q9C002	83 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ACTR3C	Q9C0K3	210 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	SLC25A31	Q9H0C2	315 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	EGLN3	Q9H6Z9	239 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	KLK11	Q9UBX7	282 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	SHPK	Q9UHJ6	478 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ZNF107	Q9UII5	783 aa	Predicted RBP	4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	GNG8	Q9UK08	70 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ZNF580	Q9UK33	172 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	PITPNC1	Q9UKF7	332 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	AMDHD2	Q9Y303	409 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	CENPE	Q02224	2701 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	PLCE1	Q9P212	2302 aa		4.16	□□□□□ -1.74
CSMD3-208	ENST00000497026	ARFGEF3	Q5TH69	2177 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	OTOG	Q6ZRI0	2925 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	USF3	Q68DE3	2245 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	ARID1A	O14497	2285 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	IGKV2D-30	A0A075B6S6	120 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026		A0A087WUU8	490 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	IGKV1D-43	A0A0B4J1Z2	117 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	IGHV1-18	A0A0C4DH31	117 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	TMEM269	A0A1B0GVZ9	245 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026		A0A1W2PPE2	198 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	IFITM5	A6NNB3	132 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	RIIAD1	A6NNX1	92 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	PPP5D1	E7EU14	171 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026		J3QLW9	94 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026		J3QRE1	110 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	DCTN6	O00399	190 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	CDC42EP2	O14613	210 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	XRCC3	O43542	346 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	IGKV3-15	P01624	115 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	IGLV1-44	P01699	117 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	SNRPC	P09234	159 aa	Known RBP	4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	PGA4	P0DJD7	388 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	PGA3	P0DJD8	388 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	PGAM2	P15259	253 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	ZNF19	P17023	458 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	CDK2	P24941	298 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	PSMB6	P28072	239 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	AQP2	P41181	271 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	AKR1C3	P42330	323 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	CDKN1B	P46527	198 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	OR3A1	P47881	315 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	BID	P55957	195 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	PRPS1	P60891	318 aa		4.15	□□□□□ -1.74
CSMD3-208	ENST00000497026	RAP1B	P61224	184 aa		4.15	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 35 ms