RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 GNG12Q9UBI6 72 aa15.36■□□□□ 0.05
USP40-217ENST00000496298 DNAH3Q8TD57 4116 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 RGS10O43665 173 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 MPIG6BO95866 241 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 CRHBPP24387 322 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 MORN2Q502X0 79 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 LY6G6FQ5SQ64 297 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 OR10K2Q6IF99 312 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 TMEM91Q6ZNR0 172 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 OR2T10Q8NGZ9 312 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 UFD1Q92890 307 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 TM2D1Q9BX74 207 aa15.35■□□□□ 0.05
USP40-217ENST00000496298 TMEM14DPA8MWL7 114 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 TXNL1O43396 289 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 HTR2CP28335 458 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 HTD2P86397 168 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 UNC119Q13432 240 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 TRAM1Q15629 374 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 PRSS48Q7RTY5 328 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 TGIF2LXQ8IUE1 241 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 OR6M1Q8NGM8 313 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 NEDD4LQ96PU5 975 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 SULT4A1Q9BR01 284 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 TMEM59Q9BXS4 323 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 VCX3BQ9H321 246 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 OR2S2Q9NQN1 319 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 PLSCR3Q9NRY6 295 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 KCNIP1Q9NZI2 227 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 LRRC42Q9Y546 428 aa15.34■□□□□ 0.05
USP40-217ENST00000496298 IGHV3-72A0A0B4J1Y9 119 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 A0A1W2PRX2 142 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 PSMB11A5LHX3 300 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 BPNT1O95861 308 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 CPEP16870 476 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 PSMA1P25786 263 aaKnown RBP15.33■□□□□ 0.04
USP40-217ENST00000496298 MLLT11Q13015 90 aaPredicted RBP15.33■□□□□ 0.04
USP40-217ENST00000496298 OXLD1Q5BKU9 147 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 PRR18Q8N4B5 295 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 OR10V1Q8NGI7 309 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 CHPT1Q8WUD6 406 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 TMEM203Q969S6 136 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 GFI1Q99684 422 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 JPT1Q9UK76 154 aa15.33■□□□□ 0.04
USP40-217ENST00000496298 LANCL1O43813 399 aa15.32■□□□□ 0.04
USP40-217ENST00000496298 MOSP00540 346 aa15.32■□□□□ 0.04
USP40-217ENST00000496298 SLC35E3Q7Z769 313 aa15.32■□□□□ 0.04
USP40-217ENST00000496298 Q8N9W7 124 aa15.32■□□□□ 0.04
USP40-217ENST00000496298 OR8H1Q8NGG4 311 aa15.32■□□□□ 0.04
USP40-217ENST00000496298 FAAP24Q9BTP7 215 aa15.32■□□□□ 0.04
USP40-217ENST00000496298 ABCG5Q9H222 651 aa15.32■□□□□ 0.04
USP40-217ENST00000496298 LIN7CQ9NUP9 197 aaKnown RBP15.32■□□□□ 0.04
USP40-217ENST00000496298 ZNF736B4DX44 427 aaPredicted RBP15.31■□□□□ 0.04
USP40-217ENST00000496298 SLC17A2O00624 439 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 YPEL1O60688 119 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 NAPSAO96009 420 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 HSMCR30P0CW71 290 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 HSPA13P48723 471 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 RPS25P62851 125 aaKnown RBP15.31■□□□□ 0.04
USP40-217ENST00000496298 HMGN3Q15651 99 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 NKAPLQ5M9Q1 402 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 ZNF880Q6PDB4 577 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 REC114Q7Z4M0 266 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 C6orf201Q7Z4U5 140 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 C5orf24Q7Z6I8 188 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 FAM89BQ8N5H3 189 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 OR52L2PQ8NGH6 319 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 NOL4LQ96MY1 436 aaPredicted RBP15.31■□□□□ 0.04
USP40-217ENST00000496298 YPEL2Q96QA6 119 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 MGLLQ99685 303 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 NICN1Q9BSH3 213 aa15.31■□□□□ 0.04
USP40-217ENST00000496298 A0A0A6YYD4 124 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 LINC01548A6NM66 108 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 SERPINE3A8MV23 424 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 ARL6IP5O75915 188 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 PF4V1P10720 104 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 GNMTQ14749 295 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 IZUMO2Q6UXV1 221 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 Q6ZPA2 131 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 OR2W3Q7Z3T1 314 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 ZNF329Q86UD4 541 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 ODF3L1Q8IXM7 274 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 COMMD1Q8N668 190 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 GALMQ96C23 342 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 S1PR3Q99500 378 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 LPAR5Q9H1C0 372 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 KCNK15Q9H427 330 aa15.3■□□□□ 0.04
USP40-217ENST00000496298 TRBV6-6A0A0A6YYG2 114 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 NCBP2LA6PVI3 153 aaKnown RBP15.29■□□□□ 0.04
USP40-217ENST00000496298 RRP9O43818 475 aaKnown RBP15.29■□□□□ 0.04
USP40-217ENST00000496298 CD33P20138 364 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 BLVRBP30043 206 aaPredicted RBP15.29■□□□□ 0.04
USP40-217ENST00000496298 PPP1CCP36873 323 aaKnown RBP15.29■□□□□ 0.04
USP40-217ENST00000496298 MAP2K4P45985 399 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 GPR12P47775 334 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 FOXRED2Q8IWF2 684 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 STPG2Q8N412 459 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 SVOPQ8N4V2 548 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 FAM71E2Q8N5Q1 922 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 ABHD14AQ9BUJ0 271 aa15.29■□□□□ 0.04
USP40-217ENST00000496298 CCDC90BQ9GZT6 254 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms