RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GPR157Q5UAW9 335 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 UNQ6494/PRO21346Q6UXR6 183 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 HEPN1Q6WQI6 88 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 TECTBQ96PL2 329 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 TMEM222Q9H0R3 208 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 ARV1Q9H2C2 271 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 SEBOXQ9HB31 216 aaPredicted RBP14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 TINAGQ9UJW2 476 aa14.05□□□□□ -0.16
CCDC88B-210ENST00000494566 SLC22A20A6NK97 555 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 PPIHO43447 177 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 TK1P04183 234 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 CCDC71LQ8N9Z2 235 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 S100PBPQ96BU1 408 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 RBMXL1Q96E39 390 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 ZMAT5Q9UDW3 170 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 KLF13Q9Y2Y9 288 aaPredicted RBP14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 KLRC4-KLRK1H3BQV0 150 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 NAPSAO96009 420 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 PSG2P11465 335 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 FABP4P15090 132 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 ICAM4Q14773 271 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 HMGN3Q15651 99 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 OR5P3Q8WZ94 311 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 MUCL1Q96DR8 90 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 OR51M1Q9H341 326 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 OTOGLQ3ZCN5 2332 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 ANKRD30BLA7E2S9 258 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 LYZL6O75951 148 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 SRP19P09132 144 aaKnown RBP14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 S100PP25815 95 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 ARR3P36575 388 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 RNF212Q495C1 297 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 SSX7Q7RTT5 188 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 WDYHV1Q96HA8 205 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 TMED3Q9Y3Q3 217 aa14.04□□□□□ -0.16
CCDC88B-210ENST00000494566 TFF1P04155 84 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 SOD3P08294 240 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 ELOBQ15370 118 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 SPINK9Q5DT21 86 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 ZNF766Q5HY98 468 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 OR1A1Q9P1Q5 309 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 ERRFI1Q9UJM3 462 aaPredicted RBP14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 KCNS2Q9ULS6 477 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 TRGV5A0A0B4J1U4 118 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 TRAV24A0A0B4J272 114 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 NKX2-8O15522 239 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 SCAF4O95104 1147 aaKnown RBP14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 S100A2P29034 98 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 IDH3GP51553 393 aaPredicted RBP14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 RNPS1Q15287 305 aaKnown RBP14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 RHEBQ15382 184 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 Q6ZRM9 215 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 LINC00469Q8N7U9 141 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 SNX22Q96L94 193 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 PLEKHF2Q9H8W4 249 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 ROS1P08922 2347 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 ATMQ13315 3056 aa14.03□□□□□ -0.16
CCDC88B-210ENST00000494566 SS18L1O75177 396 aaPredicted RBP14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 CD55P08174 381 aa14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 CD46P15529 392 aa14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 S100A12P80511 92 aa14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 FER1L6-AS2Q96M78 137 aa14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 WFIKKN1Q96NZ8 548 aa14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 AURKAIP1Q9NWT8 199 aaPredicted RBP14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 STRAPQ9Y3F4 350 aaKnown RBP14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 GVINP1Q7Z2Y8 2422 aa14.02□□□□□ -0.16
CCDC88B-210ENST00000494566 SIRPB1O00241 398 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 UCP3P55916 312 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 ZNF266Q14584 549 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 LRTM2Q8N967 370 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 Q8NFD4 153 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 OR5A2Q8NGI9 324 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 MRPL30Q8TCC3 161 aaKnown RBP14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 NIPSNAP3BQ9BS92 247 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 OR2J1Q9GZK6 312 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 RNF150Q9ULK6 438 aa14.02□□□□□ -0.17
CCDC88B-210ENST00000494566 SOX15O60248 233 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BKO60814 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 IGHV2-70P01814 119 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BJP06899 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BOP23527 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BBP33778 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 CCL11P51671 97 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BDP58876 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BCP62807 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 TESK1Q15569 626 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST2H2BEQ16778 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 FBXW9Q5XUX1 488 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 OR8G2PQ6IF36 304 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 WDR86Q86TI4 376 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BHQ93079 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 PLPPR2Q96GM1 343 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BNQ99877 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 HIST1H2BMQ99879 126 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 PLK3Q9H4B4 646 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 CADP27708 2225 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 RIF1Q5UIP0 2472 aaKnown RBP14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 DMXL2Q8TDJ6 3036 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 SPTBN2O15020 2390 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms