RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SPEF1Q9Y4P9 236 aa9.04□□□□□ -0.96
USP4-214ENST00000491791 UTP20O75691 2785 aaKnown RBP9.04□□□□□ -0.96
USP4-214ENST00000491791 UNC79Q9P2D8 2635 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 A0A1B0GU03 582 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 NKX2-6A6NCS4 301 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 OOEPA6NGQ2 149 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 SIRPB1O00241 398 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 TIMM8AO60220 97 aaPredicted RBP9.03□□□□□ -0.96
USP4-214ENST00000491791 SEC11BP0C7V7 166 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 GLI4P10075 376 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 GATA4P43694 442 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 SULT1A2P50226 295 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 RPS23P62266 143 aaKnown RBP9.03□□□□□ -0.96
USP4-214ENST00000491791 EIF4EBP1Q13541 118 aaPredicted RBP9.03□□□□□ -0.96
USP4-214ENST00000491791 TUSC1Q2TAM9 212 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 MST1LQ2TV78 715 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 SMIM21Q3B7S5 101 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 FAM74A1Q5RGS3 127 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 RPL7L1Q6DKI1 246 aaKnown RBP9.03□□□□□ -0.96
USP4-214ENST00000491791 FAM180AQ6UWF9 173 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 TCTEX1D1Q8N7M0 179 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 OR52M1Q8NGK5 317 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 LINC00052Q96N35 136 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 GINS3Q9BRX5 216 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 TAF9BQ9HBM6 251 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 ELOVL5Q9NYP7 299 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 JKAMPQ9P055 326 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 FBXL17Q9UF56 701 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 ZDHHC8Q9ULC8 765 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 RCL1Q9Y2P8 373 aaKnown RBP9.03□□□□□ -0.96
USP4-214ENST00000491791 PRRC2CQ9Y520 2896 aaKnown RBP9.03□□□□□ -0.96
USP4-214ENST00000491791 ICE1Q9Y2F5 2266 aa9.03□□□□□ -0.96
USP4-214ENST00000491791 ESPL1Q14674 2120 aa9.02□□□□□ -0.96
USP4-214ENST00000491791 KIAA1324LA8MWY0 1029 aaPredicted RBP9.02□□□□□ -0.97
USP4-214ENST00000491791 SRRM5B3KS81 715 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 K7EM74 188 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 KCNAB3O43448 404 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 PSPNO60542 156 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 LHBP01229 141 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 GRPP07492 148 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 PVALBP20472 110 aaPredicted RBP9.02□□□□□ -0.97
USP4-214ENST00000491791 NKX2-1P43699 371 aaPredicted RBP9.02□□□□□ -0.97
USP4-214ENST00000491791 RAB5CP51148 216 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 BLOC1S1P78537 153 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 GNMTQ14749 295 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 C10orf91Q5T1B1 145 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 MRGPRGQ86SM5 289 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 ARL11Q969Q4 196 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 MUCL1Q96DR8 90 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 HIPK2Q9H2X6 1198 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 PARP11Q9NR21 331 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 MMP26Q9NRE1 261 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 COA4Q9NYJ1 87 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 KCNIP1Q9NZI2 227 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 ERRFI1Q9UJM3 462 aaPredicted RBP9.02□□□□□ -0.97
USP4-214ENST00000491791 TRAPPC2LQ9UL33 140 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 LSM5Q9Y4Y9 91 aaKnown RBP9.02□□□□□ -0.97
USP4-214ENST00000491791 CREBBPQ92793 2442 aa9.02□□□□□ -0.97
USP4-214ENST00000491791 BORCS7-ASMTA0A0B4J1R7 106 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 RNF212BA8MTL3 300 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 HSPB6O14558 160 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 ZNF737O75373 536 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 CRYAAP02489 173 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 ADH4P08319 380 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 GNLYP22749 145 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 OR3A1P47881 315 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 FABP6P51161 128 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 HTD2P86397 168 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 BAXQ07812 192 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 PJVKQ0ZLH3 352 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 MEX3BQ6ZN04 569 aaKnown RBP9.01□□□□□ -0.97
USP4-214ENST00000491791 C5orf24Q7Z6I8 188 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 OR2C3Q8N628 320 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 COMMD1Q8N668 190 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 NUP37Q8NFH4 326 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 OR1S2Q8NGQ3 325 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 FAM222BQ8WU58 562 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 TMEM171Q8WVE6 324 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 TMED6Q8WW62 240 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 ERGIC1Q969X5 290 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 S100PBPQ96BU1 408 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 COQ2Q96H96 371 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 C1QTNF6Q9BXI9 259 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 SLC25A31Q9H0C2 315 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 NARFLQ9H6Q4 476 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 PLEKHF2Q9H8W4 249 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 LYRM2Q9NU23 88 aaPredicted RBP9.01□□□□□ -0.97
USP4-214ENST00000491791 LIN7CQ9NUP9 197 aaKnown RBP9.01□□□□□ -0.97
USP4-214ENST00000491791 TAS2R3Q9NYW6 316 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 RNF115Q9Y4L5 304 aa9.01□□□□□ -0.97
USP4-214ENST00000491791 CENPEQ02224 2701 aa9□□□□□ -0.97
USP4-214ENST00000491791 C12orf77C9JDV5 145 aa9□□□□□ -0.97
USP4-214ENST00000491791 FAM90A26D6RGX4 464 aa9□□□□□ -0.97
USP4-214ENST00000491791 ITGB1BP1O14713 200 aa9□□□□□ -0.97
USP4-214ENST00000491791 HSD17B6O14756 317 aa9□□□□□ -0.97
USP4-214ENST00000491791 SPP1P10451 314 aa9□□□□□ -0.97
USP4-214ENST00000491791 UQCRFS1P47985 274 aa9□□□□□ -0.97
USP4-214ENST00000491791 MSMPQ1L6U9 139 aa9□□□□□ -0.97
USP4-214ENST00000491791 BTNL8Q6UX41 500 aa9□□□□□ -0.97
USP4-214ENST00000491791 DOLPP1Q86YN1 238 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms