RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 CCDC12Q8WUD4 166 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 C22orf15Q8WYQ4 148 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 CIDECQ96AQ7 238 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 CHMP6Q96FZ7 201 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SLC25A44Q96H78 314 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 CPB2Q96IY4 423 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 PACRGQ96M98 296 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 QKIQ96PU8 341 aaKnown RBP eCLIP0.83□□□□□ -2.28
SMC4-220ENST00000488017 TIPINQ9BVW5 301 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 BEX2Q9BXY8 128 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 PRRG3Q9BZD7 231 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ZNF436Q9C0F3 470 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 ALX4Q9H161 411 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 OR52A5Q9H2C5 316 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SLC38A1Q9H2H9 487 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 WDR55Q9H6Y2 383 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 ASCL3Q9NQ33 180 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 LZTFL1Q9NQ48 299 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 DIABLOQ9NR28 239 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 IMP3Q9NV31 184 aaKnown RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 RMND1Q9NWS8 449 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 MS4A12Q9NXJ0 267 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 IFNKQ9P0W0 207 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 RBM12B-AS1Q9P1G2 102 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SMPXQ9UHP9 88 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 NAGKQ9UJ70 344 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 RAB23Q9ULC3 237 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SLC7A11Q9UPY5 501 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ZNF443Q9Y2A4 671 aaPredicted RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 NDUFAF1Q9Y375 327 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ZNF780BQ9Y6R6 833 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ADGRL2O95490 1459 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 NCOA2Q15596 1464 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SCAF11Q99590 1463 aaKnown RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 FANCD2Q9BXW9 1451 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 MBD5Q9P267 1494 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 MLH3Q9UHC1 1453 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 ANKRD31Q8N7Z5 1873 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 TRPM7Q96QT4 1865 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 DYSFO75923 2080 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 SPHKAPQ2M3C7 1700 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 PEAK1Q9H792 1746 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 MAPKBP1O60336 1514 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 HMGXB3Q12766 1538 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 UGGT2Q9NYU1 1516 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 STRCQ7RTU9 1775 aa0.83□□□□□ -2.28
SMC4-220ENST00000488017 RBBP6Q7Z6E9 1792 aaKnown RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 EIF3AQ14152 1382 aaKnown RBP0.83□□□□□ -2.28
SMC4-220ENST00000488017 CHD3Q12873 2000 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 SBF2Q86WG5 1849 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ARFGEF1Q9Y6D6 1849 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TARBP1Q13395 1621 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 CLIP1P30622 1438 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 VPS8Q8N3P4 1428 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PDCD11Q14690 1871 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 SHPRHQ149N8 1683 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CCDC88BA6NC98 1476 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 AQRO60306 1485 aaKnown RBP eCLIP0.82□□□□□ -2.284e-8■■■■■ 29.3
SMC4-220ENST00000488017 A2MP01023 1474 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ARHGAP35Q9NRY4 1499 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 NRXN1Q9ULB1 1477 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 BAHCC1Q9P281 2608 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SUPT6HQ7KZ85 1726 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 ARHGEF28Q8N1W1 1705 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 TRAV8-7A0A075B6U6 113 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 A0A1W2PNM2 257 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 A0A1W2PPV4 95 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SLC5A10A0PJK1 596 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ANKRD20A5PA0PJZ0 165 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PQLC2LA1A4F0 135 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 GMNCA6NCL1 334 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 EFCAB10A6NFE3 127 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TVP23AA6NH52 213 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 OR2AT4A6NND4 320 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 C2orf74A8MZ97 194 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SEC14L6B5MCN3 397 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 KLRC4-KLRK1H3BQV0 150 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SMLR1H3BR10 107 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 K7ERS5 55 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 TXNDC9O14530 226 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ARPC5O15511 151 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 KDELR3O43731 214 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CALUO43852 315 aaPredicted RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 PFDN1O60925 122 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SMIM24O75264 130 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 ALOX12BO75342 701 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PSIP1O75475 530 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 POP7O75817 140 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 ATP6V1G2O95670 118 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 SNAP29O95721 258 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 MBP02144 154 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PPBPP02775 128 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 IFNA6P05013 189 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 RPS17P08708 135 aaKnown RBP0.82□□□□□ -2.28
SMC4-220ENST00000488017 HTR1AP08908 422 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 FBP1P09467 338 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 NBEAP1P0C6P0 100 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CGB3P0DN86 165 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 CGB7P0DN87 165 aa0.82□□□□□ -2.28
SMC4-220ENST00000488017 PSKH1P11801 424 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms