RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 TRAPPC2P0DI81 140 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 TRAPPC2BP0DI82 140 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 PTHLHP12272 177 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 CFL1P23528 166 aaKnown RBP2.2□□□□□ -2.06
USP48-209ENST00000487880 FUSP35637 526 aaKnown RBP eCLIP2.2□□□□□ -2.06
USP48-209ENST00000487880 CBX5P45973 191 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 AQP4P55087 323 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 TRIP13Q15645 432 aaPredicted RBP2.2□□□□□ -2.06
USP48-209ENST00000487880 ZNF404Q494X3 552 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 C6orf183Q5T699 404 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 LHFPL5Q8TAF8 219 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 RAB2BQ8WUD1 216 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 CIDECQ96AQ7 238 aaPredicted RBP2.2□□□□□ -2.06
USP48-209ENST00000487880 CCDC127Q96BQ5 260 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 TAMM41Q96BW9 452 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 C12orf43Q96C57 262 aaKnown RBP2.2□□□□□ -2.06
USP48-209ENST00000487880 ISOC1Q96CN7 298 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 DCUN1D1Q96GG9 259 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 RILPQ96NA2 401 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 METTL26Q96S19 204 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 CIB1Q99828 191 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 PORCNQ9H237 461 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 TRABDQ9H4I3 376 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 MCTS1Q9ULC4 181 aaKnown RBP2.2□□□□□ -2.06
USP48-209ENST00000487880 SNX24Q9Y343 169 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 RREB1Q92766 1687 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 KDM3BQ7LBC6 1761 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 TIAM2Q8IVF5 1701 aa2.2□□□□□ -2.06
USP48-209ENST00000487880 NWD1Q149M9 1564 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 MYH6P13533 1939 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 A0A1B0GUL6 1792 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 EXOC1LA0A1B0GW35 172 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 GOLGA8IPA6NC78 632 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 OR5K4A6NMS3 321 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 I3L4J1 428 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 TXNDC9O14530 226 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 ZW10O43264 779 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 NDUFA2O43678 99 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 MYO1DO94832 1006 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 GZMAP12544 262 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 CD40LGP29965 261 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 SLCO1A2P46721 670 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 ETV1P50549 477 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 GZMMP51124 257 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 IL5RAQ01344 420 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 IFITM2Q01629 132 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 NKAIN1Q4KMZ8 207 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 SYT6Q5T7P8 510 aaPredicted RBP2.19□□□□□ -2.06
USP48-209ENST00000487880 PLEKHG7Q6ZR37 379 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 ZNF767PQ75MW2 155 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 AKAP14Q86UN6 197 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 SLC13A5Q86YT5 568 aaPredicted RBP2.19□□□□□ -2.06
USP48-209ENST00000487880 CLVS1Q8IUQ0 354 aaPredicted RBP2.19□□□□□ -2.06
USP48-209ENST00000487880 CA13Q8N1Q1 262 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 CCNYL1Q8N7R7 359 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 ASCC1Q8N9N2 400 aaKnown RBP2.19□□□□□ -2.06
USP48-209ENST00000487880 OR8S1Q8NH09 359 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 MUC7Q8TAX7 377 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 RMND5BQ96G75 393 aaPredicted RBP2.19□□□□□ -2.06
USP48-209ENST00000487880 GOLPH3Q9H4A6 298 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 C12orf4Q9NQ89 552 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 TAS2R7Q9NYW3 318 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 RAB23Q9ULC3 237 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 POMPQ9Y244 141 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 AP3M1Q9Y2T2 418 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 INSIG2Q9Y5U4 225 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 LRP5O75197 1615 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 ROBO3Q96MS0 1386 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 NWD2Q9ULI1 1742 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 KIF13BQ9NQT8 1826 aa2.19□□□□□ -2.06
USP48-209ENST00000487880 USP54Q70EL1 1684 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 FMN2Q9NZ56 1722 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 SIPA1L2Q9P2F8 1722 aaPredicted RBP2.18□□□□□ -2.06
USP48-209ENST00000487880 IGHV3-43A0A0B4J1X8 118 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 A0A0G2JND7 137 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 ZNF878C9JN71 531 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 J3QRE1 110 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 ZNF593O00488 134 aaPredicted RBP2.18□□□□□ -2.06
USP48-209ENST00000487880 ISLRO14498 428 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 KDELR3O43731 214 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 SLC37A4O43826 429 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 MRPS14O60783 128 aaKnown RBP2.18□□□□□ -2.06
USP48-209ENST00000487880 CDK14O94921 469 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 IGHMP01871 453 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 IFNA16P05015 189 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 CRYGCP07315 174 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 UCHL3P15374 230 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 CASP1P29466 404 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 SERPINB1P30740 379 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 RPA3P35244 121 aaPredicted RBP2.18□□□□□ -2.06
USP48-209ENST00000487880 PSMD8P48556 350 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 SERPINB10P48595 397 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 POU6F1Q14863 301 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 CDK10Q15131 360 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 SSX1Q16384 188 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 TAL2Q16559 108 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 EXOC3L4Q17RC7 722 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 ZNF181Q2M3W8 571 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 CCDC58Q4VC31 144 aa2.18□□□□□ -2.06
USP48-209ENST00000487880 IDNKQ5T6J7 187 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms