RNA–Protein interactions for RNA: ENST00000478999.1

VPS45-208, Transcript of vacuolar protein sorting 45 homolog, human

TSL 2

Gene VPS45, Length 468 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS45-208	ENST00000478999	PRSS57	Q6UWY2	283 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	LDLRAD3	Q86YD5	345 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	CMTM1	Q8IZ96	169 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	ZNF565	Q8N9K5	539 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	OR5T2	Q8NGG2	359 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	OR4A4P	Q8NGN8	299 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	MSI2	Q96DH6	328 aa	Known RBP	7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	PLPPR2	Q96GM1	343 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	SMIM8	Q96KF7	97 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	TMEM56	Q96MV1	263 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	MICU1	Q9BPX6	476 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	RTL8A	Q9BWD3	113 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	TMEM222	Q9H0R3	208 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	ARV1	Q9H2C2	271 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	ESRP2	Q9H6T0	727 aa	Known RBP	7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	OBP2B	Q9NPH6	170 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	PLSCR4	Q9NRQ2	329 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	GSKIP	Q9P0R6	139 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	PCDHB10	Q9UN67	800 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	TMEM56-RWDD3	S4R434	201 aa		7.1	□□□□□ -1.27
VPS45-208	ENST00000478999	MPPED1	O15442	326 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	ST8SIA3	O43173	380 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	CGA	P01215	116 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	IGHV3-9	P01782	118 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	SLC25A6	P12236	298 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	RAC2	P15153	192 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	BCL3	P20749	454 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	CCNO	P22674	350 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	AADAC	P22760	399 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	CCKAR	P32238	428 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	KCNJ3	P48549	501 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	SULT1A2	P50226	295 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	GPM6A	P51674	278 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	F2RL1	P55085	397 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	ATP5J2	P56134	94 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	PJVK	Q0ZLH3	352 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	GNMT	Q14749	295 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	DMRTC1	Q5HYR2	192 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	FAM74A1	Q5RGS3	127 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	ZNF880	Q6PDB4	577 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	FAM58A	Q8N1B3	248 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	SVBP	Q8N300	66 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	LHFPL5	Q8TAF8	219 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	TOMM40L	Q969M1	308 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	SLAMF9	Q96A28	289 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	MRPL24	Q96A35	216 aa	Known RBP	7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	MARS2	Q96GW9	593 aa	Known RBP	7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	CABLES2	Q9BTV7	478 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	TAF9B	Q9HBM6	251 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	CDH20	Q9HBT6	801 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	PARP11	Q9NR21	331 aa		7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	FAM212B	Q9NTI7	297 aa	Predicted RBP	7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	TMA7	Q9Y2S6	64 aa	Known RBP	7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	CARHSP1	Q9Y2V2	147 aa	Known RBP	7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	YLPM1	P49750	1951 aa	Known RBP	7.09	□□□□□ -1.27
VPS45-208	ENST00000478999	ROS1	P08922	2347 aa		7.09	□□□□□ -1.28
VPS45-208	ENST00000478999	C3orf85	A0A1B0GTC6	90 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	MSGN1	A6NI15	193 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	ZNF705E	A8MWA4	302 aa	Predicted RBP	7.08	□□□□□ -1.28
VPS45-208	ENST00000478999		H0Y980	276 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	PHF1	O43189	567 aa	Predicted RBP	7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	SIAH2	O43255	324 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	CD3E	P07766	207 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	SEC11B	P0C7V7	166 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	FAM157C	P0CG43	387 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	UCP1	P25874	307 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	NPBWR2	P48146	333 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	FXYD4	P59646	89 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	UBE2N	P61088	152 aa	Known RBP	7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	HLA-DRB3	P79483	266 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	MZT1	Q08AG7	82 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	GUSBP1	Q15486	140 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	OR8G1	Q15617	311 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	HMGN3	Q15651	99 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	FAM76B	Q5HYJ3	339 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	SPIN3	Q5JUX0	258 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	C10orf91	Q5T1B1	145 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999		Q6ZT83	130 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	C17orf78	Q8N4C9	275 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	SPERT	Q8NA61	448 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	OR5D13	Q8NGL4	314 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	OR1S2	Q8NGQ3	325 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	LILRB1	Q8NHL6	650 aa	Predicted RBP	7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	NEK7	Q8TDX7	302 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	GLYATL2	Q8WU03	294 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	FAM216A	Q8WUB2	273 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	TMED6	Q8WW62	240 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	S100PBP	Q96BU1	408 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	MUCL1	Q96DR8	90 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	KIRREL1	Q96J84	757 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	SLC25A31	Q9H0C2	315 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	OR51I2	Q9H344	312 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	MTCH1	Q9NZJ7	389 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	STRAP	Q9Y3F4	350 aa	Known RBP	7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	RNF115	Q9Y4L5	304 aa		7.08	□□□□□ -1.28
VPS45-208	ENST00000478999	USF3	Q68DE3	2245 aa		7.07	□□□□□ -1.28
VPS45-208	ENST00000478999	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	7.07	□□□□□ -1.28
VPS45-208	ENST00000478999	TMEM218	A2RU14	115 aa		7.07	□□□□□ -1.28
VPS45-208	ENST00000478999	IQCF6	A8MYZ5	107 aa		7.07	□□□□□ -1.28
VPS45-208	ENST00000478999	TRIM77	I1YAP6	450 aa		7.07	□□□□□ -1.28

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms