RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 SOX15O60248 233 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 MT-ND4P03905 459 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 CSTBP04080 98 aaKnown RBP13.17□□□□□ -0.3
VIM-204ENST00000478746 ZNF19P17023 458 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 ECSCRQ19T08 205 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 C5orf64Q2M2E5 130 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 AMIGO2Q86SJ2 522 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 OR10V1Q8NGI7 309 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 CST11Q9H112 138 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 RIBC2Q9H4K1 309 aa13.17□□□□□ -0.3
VIM-204ENST00000478746 FOXA2Q9Y261 457 aaPredicted RBP13.17□□□□□ -0.3
VIM-204ENST00000478746 NBR2O15453 112 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 SPINT2O43291 252 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 IGHV3-11P01762 117 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 RAB3AP20336 220 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 ATAD3CQ5T2N8 411 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 STEAP3Q658P3 488 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 ASCL4Q6XD76 172 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 OR52N1Q8NH53 320 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 NEK7Q8TDX7 302 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 PELI1Q96FA3 418 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 CENPNQ96H22 339 aaPredicted RBP13.16□□□□□ -0.3
VIM-204ENST00000478746 TMED9Q9BVK6 235 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 RAB9BQ9NP90 201 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 ING4Q9UNL4 249 aa13.16□□□□□ -0.3
VIM-204ENST00000478746 C12orf77C9JDV5 145 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 AIPO00170 330 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 GEMIN2O14893 280 aaKnown RBP13.15□□□□□ -0.3
VIM-204ENST00000478746 CDRT1O95170 752 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 BAG2O95816 211 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 RPSAP08865 295 aaKnown RBP13.15□□□□□ -0.3
VIM-204ENST00000478746 RBM11P57052 281 aaKnown RBP13.15□□□□□ -0.3
VIM-204ENST00000478746 RAB40BQ12829 278 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 C19orf54Q5BKX5 351 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 NHLRC3Q5JS37 347 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 ZNF660Q6AZW8 331 aaPredicted RBP13.15□□□□□ -0.3
VIM-204ENST00000478746 ZNF497Q6ZNH5 498 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 PRR18Q8N4B5 295 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 STX19Q8N4C7 294 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 TCTEX1D1Q8N7M0 179 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 GABARAPL3Q9BY60 117 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 METTL9Q9H1A3 318 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 KIAA1456Q9P272 454 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 TRAPPC2LQ9UL33 140 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 DHDHQ9UQ10 334 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 FBXO7Q9Y3I1 522 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 A3GALT2U3KPV4 340 aa13.15□□□□□ -0.3
VIM-204ENST00000478746 H0Y980 276 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 J3QRE1 110 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 SLC25A17O43808 307 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 CRIP2P52943 208 aaPredicted RBP13.14□□□□□ -0.31
VIM-204ENST00000478746 TMEM267Q0VDI3 215 aaPredicted RBP13.14□□□□□ -0.31
VIM-204ENST00000478746 RCN1Q15293 331 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 TMEM30BQ3MIR4 351 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 SYT6Q5T7P8 510 aaPredicted RBP13.14□□□□□ -0.31
VIM-204ENST00000478746 PYHIN1Q6K0P9 492 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 LINC00596Q86U02 117 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 PQLC1Q8N2U9 271 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 NPBQ8NG41 125 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 C4orf36Q96KX1 117 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 RHOVQ96L33 236 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 MS4A10Q96PG2 267 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 RETNQ9HD89 108 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 IMPAD1Q9NX62 359 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 NUBP2Q9Y5Y2 271 aa13.14□□□□□ -0.31
VIM-204ENST00000478746 RBMY1BA6NDE4 496 aaKnown RBP13.13□□□□□ -0.31
VIM-204ENST00000478746 RBMY1EA6NEQ0 496 aaKnown RBP13.13□□□□□ -0.31
VIM-204ENST00000478746 HBZP02008 142 aa13.13□□□□□ -0.31
VIM-204ENST00000478746 RBMY1DP0C7P1 496 aaKnown RBP13.13□□□□□ -0.31
VIM-204ENST00000478746 NDPQ00604 133 aa13.13□□□□□ -0.31
VIM-204ENST00000478746 LRRC36Q1X8D7 754 aa13.13□□□□□ -0.31
VIM-204ENST00000478746 MPV17LQ2QL34 196 aa13.13□□□□□ -0.31
VIM-204ENST00000478746 ACBD7Q8N6N7 88 aa13.13□□□□□ -0.31
VIM-204ENST00000478746 OR51A2Q8NGJ7 313 aa13.13□□□□□ -0.31
VIM-204ENST00000478746 OR1L1Q8NH94 360 aa13.13□□□□□ -0.31
VIM-204ENST00000478746 TSEN15Q8WW01 171 aaKnown RBP13.13□□□□□ -0.31
VIM-204ENST00000478746 TRUB1Q8WWH5 349 aaKnown RBP13.13□□□□□ -0.31
VIM-204ENST00000478746 MRPL48Q96GC5 212 aaKnown RBP13.13□□□□□ -0.31
VIM-204ENST00000478746 NABP2Q9BQ15 211 aa13.13□□□□□ -0.31
VIM-204ENST00000478746 RRP15Q9Y3B9 282 aaKnown RBP13.13□□□□□ -0.31
VIM-204ENST00000478746 SAC3D1A6NKF1 404 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 NDUFA3O95167 84 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 CD40LGP29965 261 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 TPPP2P59282 170 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 CX3CL1P78423 397 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 MORN2Q502X0 79 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 C6orf183Q5T699 404 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 ZNF529Q6P280 563 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 GTSCR1Q86UQ5 136 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 OR5AK2Q8NH90 309 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 ABHD5Q8WTS1 349 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 MYCBPQ99417 103 aaPredicted RBP13.12□□□□□ -0.31
VIM-204ENST00000478746 S100A13Q99584 98 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 FAM110AQ9BQ89 295 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 MRPL20Q9BYC9 149 aaKnown RBP13.12□□□□□ -0.31
VIM-204ENST00000478746 HIPK2Q9H2X6 1198 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 OR2S2Q9NQN1 319 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 IL36GQ9NZH8 169 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 RNF150Q9ULK6 438 aa13.12□□□□□ -0.31
VIM-204ENST00000478746 FRAS1Q86XX4 4008 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms