RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 LINC00596Q86U02 117 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 OR2C3Q8N628 320 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 LFNGQ8NES3 379 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 THEM6Q8WUY1 208 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 TEAD3Q99594 435 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 SPAG8Q99932 426 aaPredicted RBP5.88□□□□□ -1.47
USP54-211ENST00000474929 MROQ9BYG7 248 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 NMNAT2Q9BZQ4 307 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 PPIL3Q9H2H8 161 aaKnown RBP5.88□□□□□ -1.47
USP54-211ENST00000474929 SPAG4Q9NPE6 437 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 ABCD2Q9UBJ2 740 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 KIF25Q9UIL4 384 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 RPL36Q9Y3U8 105 aaKnown RBP5.88□□□□□ -1.47
USP54-211ENST00000474929 CDH10Q9Y6N8 788 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 V9GYS6 101 aa5.88□□□□□ -1.47
USP54-211ENST00000474929 VPS13BQ7Z7G8 4022 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 DEFB131BA0A096LNP1 70 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 RIIAD1A6NNX1 92 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 SLC33A1O00400 549 aaPredicted RBP5.87□□□□□ -1.47
USP54-211ENST00000474929 SDCBPO00560 298 aaPredicted RBP5.87□□□□□ -1.47
USP54-211ENST00000474929 RRHO14718 337 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 SLC22A1O15245 554 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 ZNF254O75437 659 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 TUSC2O75896 110 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 KDM4BO94953 1096 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 GYPBP06028 91 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 BCL3P20749 454 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 HLA-DMBP28068 263 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 FCGR2BP31994 310 aaPredicted RBP5.87□□□□□ -1.47
USP54-211ENST00000474929 SSTR5P35346 364 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 MNAT1P51948 309 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 ATP1B3P54709 279 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 CRMP1Q14194 572 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 SAMD4BQ5PRF9 694 aaKnown RBP5.87□□□□□ -1.47
USP54-211ENST00000474929 STEAP3Q658P3 488 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 OR4A47Q6IF82 309 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 ZNF562Q6V9R5 426 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 Q6ZTC4 211 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 CCDC54Q8NEL0 328 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 ZNRF4Q8WWF5 429 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 C10orf35Q96D05 121 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 AMELYQ99218 206 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 NICN1Q9BSH3 213 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 CSTL1Q9H114 145 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 GFOD1Q9NXC2 390 aa5.87□□□□□ -1.47
USP54-211ENST00000474929 DEGS1O15121 323 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 RBBP9O75884 186 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 INMTO95050 263 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 T-ENOLP0DO92 83 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 EPHA2P29317 976 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 SCN1BQ07699 218 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 TSPAN31Q12999 210 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 PAN3Q58A45 887 aaKnown RBP5.86□□□□□ -1.47
USP54-211ENST00000474929 LINC01590Q5TEZ4 76 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 GLT8D1Q68CQ7 371 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 CYP2R1Q6VVX0 501 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 ASCL4Q6XD76 172 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 RFESDQ8TAC1 157 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 GHSRQ92847 366 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 MARC2Q969Z3 335 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 PYURFQ96I23 114 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 NSMCE2Q96MF7 247 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 C17orf77Q96MU5 243 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 CHST5Q9GZS9 411 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 GORASP2Q9H8Y8 452 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 IL1RAPQ9NPH3 570 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 NDUFAF4Q9P032 175 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 ENOPH1Q9UHY7 261 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 LAMP5Q9UJQ1 280 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 ADAM30Q9UKF2 790 aa5.86□□□□□ -1.47
USP54-211ENST00000474929 TRBV4-1A0A0J9YWV2 114 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 FAM223BA6NKX1 122 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 A8MWP6 167 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 ARPC2O15144 300 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 SCAF4O95104 1147 aaKnown RBP5.85□□□□□ -1.47
USP54-211ENST00000474929 SPDEFO95238 335 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 EGR2P11161 476 aaPredicted RBP5.85□□□□□ -1.47
USP54-211ENST00000474929 HSD17B1P14061 328 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 MIFP14174 115 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 CBLN1P23435 193 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 VHLP40337 213 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 GSSP48637 474 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 RIDAP52758 137 aaKnown RBP5.85□□□□□ -1.47
USP54-211ENST00000474929 SPATS1Q496A3 300 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 BCL2L15Q5TBC7 163 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 LIPKQ5VXJ0 399 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 Q6ZSR3 168 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 FAM223AQ8IWN6 122 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 OR14K1Q8NGZ2 314 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 PP6455Q8WZ26 134 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 MCUR1Q96AQ8 359 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 C7orf34Q96L11 122 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 SULT4A1Q9BR01 284 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 FAM103A1Q9BTL3 118 aaKnown RBP5.85□□□□□ -1.47
USP54-211ENST00000474929 THTPAQ9BU02 230 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 TAS2R1Q9NYW7 299 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 MAGEL2Q9UJ55 1249 aa5.85□□□□□ -1.47
USP54-211ENST00000474929 SAMD4AQ9UPU9 718 aaKnown RBP5.85□□□□□ -1.47
USP54-211ENST00000474929 FAT1Q14517 4588 aa5.84□□□□□ -1.47
USP54-211ENST00000474929 IGKV1-27A0A075B6S5 117 aa5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 118.9 ms