RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SPACA1Q9HBV2 294 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 C1orf109Q9NX04 203 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 CD300AQ9UGN4 299 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 VPREB3Q9UKI3 123 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 SCML1Q9UN30 329 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 LCTP09848 1927 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 SDK2Q58EX2 2172 aa1.23□□□□□ -2.21
CCDC88A-212ENST00000474059 TMEM94Q12767 1356 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 CHD2O14647 1828 aaKnown RBP1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 CLUHO75153 1309 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 TENM1Q9UKZ4 2725 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 ADAMTSL1Q8N6G6 1762 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 IGSF23A1L1A6 192 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 A8MWP6 167 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 F5H5T6 163 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 F8VZ95 297 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 TOR1AO14656 332 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 LIN7AO14910 233 aaPredicted RBP1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 DENRO43583 198 aaKnown RBP1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 ASS1P00966 412 aaKnown RBP1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 GADD45AP24522 165 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 CASQ1P31415 396 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 PSG4Q00888 419 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 BSPH1Q075Z2 132 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 TRMT12Q53H54 448 aaKnown RBP1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 TIMM23BQ5SRD1 257 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 CLEC6AQ6EIG7 209 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 DOLPP1Q86YN1 238 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 ZBTB8OSQ8IWT0 167 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 OR10P1Q8NGE3 313 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 OR5C1Q8NGR4 320 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 OR2V1Q8NHB1 315 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 EBNA1BP2Q99848 306 aaKnown RBP1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 ZNF251Q9BRH9 671 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 NDEL1Q9GZM8 345 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 TMEM216Q9P0N5 145 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 CFAP45Q9UL16 551 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 WASHC3Q9Y3C0 194 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 GMEB1Q9Y692 573 aa1.22□□□□□ -2.21
CCDC88A-212ENST00000474059 LOC102725191A0A1B0GVB3 256 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 TMEM213A2RRL7 107 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 C17orf98A8MV24 154 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 M0QYV0 167 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 TP53I11O14683 189 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 CRYGDP07320 174 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 FBP1P09467 338 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 CBR1P16152 277 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 ORM2P19652 201 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 GZMHP20718 246 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 ADORA1P30542 326 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 PSMB3P49720 205 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 PDK2Q15119 407 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 PDGFRLQ15198 375 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 MAPK14Q16539 360 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 EXOC3L4Q17RC7 722 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF181Q2M3W8 571 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 SPIN4Q56A73 249 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 SDIM1Q6ZPB5 146 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 SPATA24Q86W54 205 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 SLC13A5Q86YT5 568 aaPredicted RBP1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 BLIDQ8IZY5 108 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 TMEM75Q8N9X5 138 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 OR5K1Q8NHB7 308 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 TRNT1Q96Q11 434 aaKnown RBP1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 GPR22Q99680 433 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 GTSF1LQ9H1H1 148 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 TAS2R9Q9NYW1 312 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF337Q9Y3M9 751 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 HSPE1-MOB4S4R3N1 261 aa1.21□□□□□ -2.22
CCDC88A-212ENST00000474059 H3BSA7 217 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 TOX3O15405 576 aaPredicted RBP1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 ADAP1O75689 374 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 PSMB6P28072 239 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 GRPRP30550 384 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 CD151P48509 253 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 FOXF1Q12946 379 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 C1DQ13901 141 aaKnown RBP1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 FAM229BQ4G0N7 80 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 FAM45BPQ6NSW5 357 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF322Q6U7Q0 402 aaPredicted RBP1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 Q6ZRU5 148 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF567Q8N184 647 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 OR7G1Q8NGA0 311 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 SMIM12Q96EX1 92 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 CAPZA3Q96KX2 299 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 STACQ99469 402 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 MED18Q9BUE0 208 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 TUBA4BQ9H853 241 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 LINC00527Q9UJ94 153 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 MRPS16Q9Y3D3 137 aaKnown RBP1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 KMT2EQ8IZD2 1858 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 ADAMTS7Q9UKP4 1686 aa1.2□□□□□ -2.22
CCDC88A-212ENST00000474059 PTPRJQ12913 1337 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 DAPL1A0PJW8 107 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 FTCDNL1E5RQL4 147 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 GOLGA8RI6L899 631 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 CRTAPO75718 401 aaPredicted RBP1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 ATP6V1G2O95670 118 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 ORM1P02763 201 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 OR4A8P0C604 315 aa1.19□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms