RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 CDKN2AP42771 156 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 GABRA2P47869 451 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 MT1HP80294 61 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 BDH1Q02338 343 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 BNIP1Q12981 228 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 MS4A18Q3C1V0 323 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 FAM76BQ5HYJ3 339 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 TPTE2P1Q5T6R2 138 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 AP1ARQ63HQ0 302 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 STEAP1BQ6NZ63 245 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 CCDC137Q6PK04 289 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 DEGS2Q6QHC5 323 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 ZNF730Q6ZMV8 503 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 ASRGL1Q7L266 308 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 TRPT1Q86TN4 253 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 C11orf53Q8IXP5 236 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 TMEM61Q8N0U2 210 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 Q8N9W7 124 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 POC1AQ8NBT0 407 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 OR2T27Q8NH04 317 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 RHEBL1Q8TAI7 183 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 FAM81AQ8TBF8 368 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 CIRBP-AS1Q8TBR5 109 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 MCUR1Q96AQ8 359 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 PINX1Q96BK5 328 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 TEX37Q96LM6 180 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 UHRF2Q96PU4 802 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 ADAT1Q9BUB4 502 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 PAPOLGQ9BWT3 736 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 AUNIPQ9H7T9 357 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 KAT8Q9H7Z6 458 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 SPACA1Q9HBV2 294 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 LZTFL1Q9NQ48 299 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 EXOSC3Q9NQT5 275 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 UVRAGQ9P2Y5 699 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 PEF1Q9UBV8 284 aaKnown RBP3.27□□□□□ -1.89
HMGB1-207ENST00000468384 SLC35A3Q9Y2D2 325 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 RNF11Q9Y3C5 154 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 SELENOKQ9Y6D0 94 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 KCNE3Q9Y6H6 103 aa3.27□□□□□ -1.89
HMGB1-207ENST00000468384 ARRDC5A6NEK1 342 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 BHLHE40O14503 412 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 TRMUO75648 421 aaKnown RBP3.26□□□□□ -1.89
HMGB1-207ENST00000468384 FCER2P06734 321 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 ZNF3P17036 446 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 SRMP19623 302 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 C4BPBP20851 252 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 IFNA8P32881 189 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 BIDP55957 195 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 RPL27P61353 136 aaKnown RBP3.26□□□□□ -1.89
HMGB1-207ENST00000468384 ACOT6Q3I5F7 207 aaPredicted RBP3.26□□□□□ -1.89
HMGB1-207ENST00000468384 TMEM30BQ3MIR4 351 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 GTDC1Q4AE62 458 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 SPIN3Q5JUX0 258 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 AWAT2Q6E213 333 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 ERICH5Q6P6B1 374 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 WDR82Q6UXN9 313 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 CLEC19AQ6UXS0 136 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 TPRA1Q86W33 373 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 SLC38A6Q8IZM9 456 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 SYCE1Q8N0S2 351 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 LINC00518Q8N0U6 118 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 TRIML2Q8N7C3 387 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 STPG4Q8N801 248 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 OR5L1Q8NGL2 311 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 KCNG3Q8TAE7 436 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 ZNRF4Q8WWF5 429 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 PIGCQ92535 297 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 COQ2Q96H96 371 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 SLC22A4Q9H015 551 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 WDR13Q9H1Z4 485 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 TMEM133Q9H2Q1 129 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 GEMIN7Q9H840 131 aaKnown RBP3.26□□□□□ -1.89
HMGB1-207ENST00000468384 CD274Q9NZQ7 290 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 OPTCQ9UBM4 332 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 NOP16Q9Y3C1 178 aaKnown RBP3.26□□□□□ -1.89
HMGB1-207ENST00000468384 TIMM10BQ9Y5J6 103 aa3.26□□□□□ -1.89
HMGB1-207ENST00000468384 TRAV41A0A0B4J266 112 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 TRAV25A0A0B4J276 109 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 MEX3AA1L020 520 aaKnown RBP3.25□□□□□ -1.89
HMGB1-207ENST00000468384 OOSP1A8MZH6 123 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 TEX46H3BTG2 121 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 ZSCAN12O43309 604 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 SOX15O60248 233 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 GMDSO60547 372 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 HAND1O96004 215 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 IGKV1D-33P01593 117 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 IGKV1-33P01594 117 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 IGLV2-23P01705 113 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 IGLV2-11P01706 119 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 KRT6AP02538 564 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 ALPLP05186 524 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 HMGN2P05204 90 aaKnown RBP3.25□□□□□ -1.89
HMGB1-207ENST00000468384 S100A6P06703 90 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 NEFHP12036 1026 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 PIPP12273 146 aaPredicted RBP3.25□□□□□ -1.89
HMGB1-207ENST00000468384 PRKACAP17612 351 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 GRPRP30550 384 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 CEACAM3P40198 252 aa3.25□□□□□ -1.89
HMGB1-207ENST00000468384 NAA10P41227 235 aaPredicted RBP3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms