RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 NOXA1Q86UR1 476 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 MOGAT3Q86VF5 341 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 LRTM2Q8N967 370 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 DYRK2Q92630 601 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 MSI2Q96DH6 328 aaKnown RBP9.8□□□□□ -0.84
USP54-209ENST00000464635 AKR1E2Q96JD6 320 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 ZNF436Q9C0F3 470 aaPredicted RBP9.8□□□□□ -0.84
USP54-209ENST00000464635 RANGRFQ9HD47 186 aaPredicted RBP9.8□□□□□ -0.84
USP54-209ENST00000464635 DYNLRB1Q9NP97 96 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 UFSP2Q9NUQ7 469 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 KCNIP1Q9NZI2 227 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 DNAJB11Q9UBS4 358 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 KCNIP3Q9Y2W7 256 aa9.8□□□□□ -0.84
USP54-209ENST00000464635 TANC2Q9HCD6 1990 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 IGKV1D-17A0A075B6S4 117 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 RNF212BA8MTL3 300 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 LGALS8O00214 317 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 SDCBPO00560 298 aaPredicted RBP9.79□□□□□ -0.84
USP54-209ENST00000464635 SLC22A5O76082 557 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 PPYP01298 95 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 HLA-AP01891 365 aaKnown RBP9.79□□□□□ -0.84
USP54-209ENST00000464635 FAM157CP0CG43 387 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 ZNF728P0DKX0 622 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 DAOP14920 347 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 IL2RGP31785 369 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 FCGR2CP31995 323 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 OR3A1P47881 315 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 EIF2B2P49770 351 aaKnown RBP9.79□□□□□ -0.84
USP54-209ENST00000464635 HTD2P86397 168 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 CYCSP99999 105 aaKnown RBP9.79□□□□□ -0.84
USP54-209ENST00000464635 COL10A1Q03692 680 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 STUMQ69YW2 141 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 LIN54Q6MZP7 749 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 ZNF788Q6ZQV5 615 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 SGPP2Q8IWX5 399 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 ZNF565Q8N9K5 539 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 CCDC71LQ8N9Z2 235 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 ZBTB34Q8NCN2 500 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 PLPPR1Q8TBJ4 325 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 SEC22CQ9BRL7 303 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 SUCNR1Q9BXA5 334 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 TMPRSS13Q9BYE2 586 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 RAB1BQ9H0U4 201 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 ZNF665Q9H7R5 613 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 LINC00574Q9H8X3 128 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 SAP30LQ9HAJ7 183 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 KAAG1Q9UBP8 84 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 ZNF69Q9UC07 566 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 CDC42EP3Q9UKI2 254 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 TRAPPC2LQ9UL33 140 aa9.79□□□□□ -0.84
USP54-209ENST00000464635 CRYM-AS1A6NIL9 109 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 SIRPB1O00241 398 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 ITGB1BP1O14713 200 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 TNFRSF13BO14836 293 aaPredicted RBP9.78□□□□□ -0.84
USP54-209ENST00000464635 WNT9BO14905 357 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 SCTP09683 121 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 RPS2P15880 293 aaKnown RBP9.78□□□□□ -0.84
USP54-209ENST00000464635 NPY4RP50391 375 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 HERV-K104P61576 105 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 SRSF2Q01130 221 aaKnown RBP9.78□□□□□ -0.84
USP54-209ENST00000464635 CD83Q01151 205 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 FGL1Q08830 312 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 PPP1R1AQ13522 171 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 TMED4Q7Z7H5 227 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 LDLRAD3Q86YD5 345 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 H1FOOQ8IZA3 346 aaPredicted RBP9.78□□□□□ -0.84
USP54-209ENST00000464635 CD177Q8N6Q3 437 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 OR10J5Q8NHC4 309 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 COQ8AQ8NI60 647 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 MAFIPQ8WZ33 124 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 CORO2AQ92828 525 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 TMEM230Q96A57 120 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 DACT3Q96B18 629 aaPredicted RBP9.78□□□□□ -0.84
USP54-209ENST00000464635 GALMQ96C23 342 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 KIRREL1Q96J84 757 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 FYTTD1Q96QD9 318 aaKnown RBP9.78□□□□□ -0.84
USP54-209ENST00000464635 RAB18Q9NP72 206 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 TMEM160Q9NX00 188 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 OR6C3Q9NZP0 311 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 MGAT4CQ9UBM8 478 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 OR2W1Q9Y3N9 320 aa9.78□□□□□ -0.84
USP54-209ENST00000464635 TMEM178BH3BS89 294 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 BOLA2-SMG1P6H3BVE0 249 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 SIGLEC5O15389 551 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 PHF1O43189 567 aaPredicted RBP9.77□□□□□ -0.85
USP54-209ENST00000464635 IFNA2P01563 188 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 PGAM2P15259 253 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 EGR1P18146 543 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 CXCL3P19876 107 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 CD34P28906 385 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 S100GP29377 79 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 SUPT4H1P63272 117 aaKnown RBP9.77□□□□□ -0.85
USP54-209ENST00000464635 SRPXP78539 464 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 CD300CQ08708 224 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 HERPUD1Q15011 391 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 ESCO2Q56NI9 601 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 IGSF11Q5DX21 431 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 OR10A7Q8NGE5 316 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 OR5M8Q8NGP6 311 aa9.77□□□□□ -0.85
USP54-209ENST00000464635 SPATA3Q8NHX4 192 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms