RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 COMMD3Q9UBI1 195 aa16.07■□□□□ 0.16
COL9A3-204ENST00000463487 PSG11Q9UQ72 335 aa16.07■□□□□ 0.16
COL9A3-204ENST00000463487 KCNK7Q9Y2U2 307 aa16.07■□□□□ 0.16
COL9A3-204ENST00000463487 MXRA5Q9NR99 2828 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 SMIM31A0A1B0GVY4 71 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 BUB1B-PAK6H3BSN5 160 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 FCGR3AP08637 254 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 DTYMKP23919 212 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 LOXL3P58215 753 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 UBA52P62987 128 aaKnown RBP16.06■□□□□ 0.16
COL9A3-204ENST00000463487 MADCAM1Q13477 382 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 SSX2Q16385 188 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 LRRC75BQ2VPJ9 315 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 LHFPL4Q7Z7J7 247 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 OR4P4Q8NGL7 312 aa16.06■□□□□ 0.16
COL9A3-204ENST00000463487 TRAV18A0A075B6X5 111 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 IGHV3-43A0A0B4J1X8 118 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 OOSP1A8MZH6 123 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 TRDCB7Z8K6 153 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 HSPA12AO43301 675 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 XRCC3O43542 346 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 APOA1P02647 267 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 LPLP06858 475 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 IGHV3-43DP0DP04 118 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 IER3P46695 156 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 SLC9A3R2Q15599 337 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 SRSF7Q16629 238 aaKnown RBP eCLIP16.05■□□□□ 0.16
COL9A3-204ENST00000463487 ZNF260Q3ZCT1 412 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 TMEM69Q5SWH9 247 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 ZDHHC22Q8N966 263 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 LEAP2Q969E1 77 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 RPEQ96AT9 228 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 ESM1Q9NQ30 184 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 CCDC59Q9P031 241 aaKnown RBP16.05■□□□□ 0.16
COL9A3-204ENST00000463487 HILPDAQ9Y5L2 63 aa16.05■□□□□ 0.16
COL9A3-204ENST00000463487 TMEM235A6NFC5 223 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 H3BMQ9 156 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 IGHV3-7P01780 117 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 RNASE1P07998 156 aaKnown RBP16.04■□□□□ 0.16
COL9A3-204ENST00000463487 ZBTB25P24278 435 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 SPCS2Q15005 226 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 LINC00311Q8N616 119 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 OR10V1Q8NGI7 309 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 OR4A4PQ8NGN8 299 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 FAM216AQ8WUB2 273 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 TOMM40LQ969M1 308 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 SSX3Q99909 188 aa16.04■□□□□ 0.16
COL9A3-204ENST00000463487 VGLL3A8MV65 326 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 YPEL1O60688 119 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 BRS3P32247 399 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 LY6G6FQ5SQ64 297 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 TPTE2P1Q5T6R2 138 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 C17orf50Q8WW18 174 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 CYYR1Q96J86 154 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 DUX5Q96PT3 197 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 YPEL2Q96QA6 119 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 OCSTAMPQ9BR26 566 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 TNFRSF19Q9NS68 423 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 SLC23A1Q9UHI7 598 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 ADAM30Q9UKF2 790 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 CEPT1Q9Y6K0 416 aa16.03■□□□□ 0.16
COL9A3-204ENST00000463487 FAM25AB3EWG3 89 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 FAM25CB3EWG5 89 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 FAM25GB3EWG6 89 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 H3BUX3 64 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 ZNF701M0R085 212 aaPredicted RBP16.02■□□□□ 0.16
COL9A3-204ENST00000463487 FABP7O15540 132 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 DIRAS3O95661 229 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 IGHV4-59P01825 116 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 CRYBA1P05813 215 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 CBX5P45973 191 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 RAB7AP51149 207 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 RPL15P61313 204 aaKnown RBP16.02■□□□□ 0.16
COL9A3-204ENST00000463487 MORN2Q502X0 79 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 C16orf87Q6PH81 154 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 SLC25A48Q6ZT89 311 aaKnown RBP16.02■□□□□ 0.16
COL9A3-204ENST00000463487 OR2AK2Q8NG84 335 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 OR52L2PQ8NGH6 319 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 EDARADDQ8WWZ3 215 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 ABHD14AQ9BUJ0 271 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 RSL24D1Q9UHA3 163 aaKnown RBP16.02■□□□□ 0.16
COL9A3-204ENST00000463487 PITPNC1Q9UKF7 332 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 VPREB3Q9UKI3 123 aa16.02■□□□□ 0.16
COL9A3-204ENST00000463487 RGS5O15539 181 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 PPP1CCP36873 323 aaKnown RBP16.01■□□□□ 0.15
COL9A3-204ENST00000463487 DYNLT3P51808 116 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 LIAT1Q6ZQX7 453 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 Q6ZS49 121 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 DYNC2LI1Q8TCX1 351 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 NUDCD2Q8WVJ2 157 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 AJUBAQ96IF1 538 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 ST6GALNAC5Q9BVH7 336 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 AUNIPQ9H7T9 357 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 RAB18Q9NP72 206 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 NDUFA13Q9P0J0 144 aa16.01■□□□□ 0.15
COL9A3-204ENST00000463487 RNF212BA8MTL3 300 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 TXNL1O43396 289 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 HPGDSO60760 199 aa16■□□□□ 0.15
COL9A3-204ENST00000463487 EIF4EP06730 217 aaKnown RBP16■□□□□ 0.15
COL9A3-204ENST00000463487 SCTP09683 121 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms