RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 HSD17B12Q53GQ0 312 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 C6orf141Q5SZD1 244 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 FAM27D1Q5T7N8 215 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 FOXB2Q5VYV0 432 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 SIGIRRQ6IA17 410 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 FAM53AQ6NSI3 398 aaPredicted RBP11.03□□□□□ -0.64
USP4-206ENST00000461553 Q6ZPA2 131 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 ZNF554Q86TJ5 538 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 STPG2Q8N412 459 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 COMMD1Q8N668 190 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 Q8N6K4 173 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 WFDC9Q8NEX5 89 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 MRPL30Q8TCC3 161 aaKnown RBP11.03□□□□□ -0.64
USP4-206ENST00000461553 PHYHIPQ92561 330 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 UFD1Q92890 307 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 ST6GALNAC6Q969X2 333 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 NEDD4LQ96PU5 975 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 ABHD14AQ9BUJ0 271 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 TAF9BQ9HBM6 251 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 LINC00527Q9UJ94 153 aa11.03□□□□□ -0.64
USP4-206ENST00000461553 LSM2Q9Y333 95 aaKnown RBP11.03□□□□□ -0.64
USP4-206ENST00000461553 H0YHG0 523 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 RRP9O43818 475 aaKnown RBP11.02□□□□□ -0.65
USP4-206ENST00000461553 SLC6A1P30531 599 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 GPR12P47775 334 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 Q8N9W7 124 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 KLHL30-AS1Q8NEE0 82 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 OR8H1Q8NGG4 311 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 DPF1Q92782 380 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 RASL11BQ9BPW5 248 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 GON7Q9BXV9 100 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 GPR61Q9BZJ8 451 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 ABCG5Q9H222 651 aa11.02□□□□□ -0.65
USP4-206ENST00000461553 MBNL3Q9NUK0 354 aaKnown RBP11.02□□□□□ -0.65
USP4-206ENST00000461553 LANCL1O43813 399 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 RGS11O94810 467 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 VSIG8P0DPA2 414 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 CHATP28329 748 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 HTR2CP28335 458 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 RPS27AP62979 156 aaKnown RBP11.01□□□□□ -0.65
USP4-206ENST00000461553 GNMTQ14749 295 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 CT45A1Q5HYN5 189 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 LIPKQ5VXJ0 399 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 STEAP3Q658P3 488 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 UNQ9370/PRO34162Q6UXP9 181 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 OR2W3Q7Z3T1 314 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 CEACAM19Q7Z692 300 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 LRRTM1Q86UE6 522 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 LINC00482Q8N8I6 264 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 CT45A3Q8NHU0 189 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 KCNG3Q8TAE7 436 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 S1PR3Q99500 378 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 ZFP57Q9NU63 452 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 NKX1-2Q9UD57 310 aaPredicted RBP11.01□□□□□ -0.65
USP4-206ENST00000461553 TPRKBQ9Y3C4 175 aa11.01□□□□□ -0.65
USP4-206ENST00000461553 BPNT1O95861 308 aa11□□□□□ -0.65
USP4-206ENST00000461553 UCHL1P09936 223 aa11□□□□□ -0.65
USP4-206ENST00000461553 HSMCR30P0CW71 290 aa11□□□□□ -0.65
USP4-206ENST00000461553 PPP1CCP36873 323 aaKnown RBP11□□□□□ -0.65
USP4-206ENST00000461553 ZNF134P52741 427 aa11□□□□□ -0.65
USP4-206ENST00000461553 GP2P55259 537 aaKnown RBP11□□□□□ -0.65
USP4-206ENST00000461553 LSAMPQ13449 338 aa11□□□□□ -0.65
USP4-206ENST00000461553 MORN2Q502X0 79 aa11□□□□□ -0.65
USP4-206ENST00000461553 C1orf100Q5SVJ3 147 aa11□□□□□ -0.65
USP4-206ENST00000461553 OR10K2Q6IF99 312 aa11□□□□□ -0.65
USP4-206ENST00000461553 TEX38Q6PEX7 206 aa11□□□□□ -0.65
USP4-206ENST00000461553 ETV3LQ6ZN32 361 aa11□□□□□ -0.65
USP4-206ENST00000461553 C8orf86Q6ZUL3 223 aa11□□□□□ -0.65
USP4-206ENST00000461553 MOB1BQ7L9L4 216 aa11□□□□□ -0.65
USP4-206ENST00000461553 OR52L2PQ8NGH6 319 aa11□□□□□ -0.65
USP4-206ENST00000461553 OR6M1Q8NGM8 313 aa11□□□□□ -0.65
USP4-206ENST00000461553 GALMQ96C23 342 aa11□□□□□ -0.65
USP4-206ENST00000461553 SULT4A1Q9BR01 284 aa11□□□□□ -0.65
USP4-206ENST00000461553 VCX3BQ9H321 246 aa11□□□□□ -0.65
USP4-206ENST00000461553 KCNK15Q9H427 330 aa11□□□□□ -0.65
USP4-206ENST00000461553 CHMP1AQ9HD42 196 aaPredicted RBP11□□□□□ -0.65
USP4-206ENST00000461553 ABRACLQ9P1F3 81 aa11□□□□□ -0.65
USP4-206ENST00000461553 ZNF736B4DX44 427 aaPredicted RBP10.99□□□□□ -0.65
USP4-206ENST00000461553 SLC22A1O15245 554 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 RGS10O43665 173 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 SRMP19623 302 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 VDAC1P21796 283 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 MYF6P23409 242 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 PSMA1P25786 263 aaKnown RBP10.99□□□□□ -0.65
USP4-206ENST00000461553 SOX6P35712 828 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 THBS3P49746 956 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 HTD2P86397 168 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 UNC119Q13432 240 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 IRF3Q14653 427 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 MMDQ15546 238 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 TRAM1Q15629 374 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 HMGN3Q15651 99 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 CXorf66Q5JRM2 361 aaPredicted RBP10.99□□□□□ -0.65
USP4-206ENST00000461553 C6orf201Q7Z4U5 140 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 MRPL41Q8IXM3 137 aaKnown RBP10.99□□□□□ -0.65
USP4-206ENST00000461553 FAM71E2Q8N5Q1 922 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 OR2AK2Q8NG84 335 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 SETD6Q8TBK2 473 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 CYYR1Q96J86 154 aa10.99□□□□□ -0.65
USP4-206ENST00000461553 NICN1Q9BSH3 213 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms