RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 C9orf16Q9BUW7 83 aa5.75□□□□□ -1.49
USP54-208ENST00000461520 KRTAP2-2Q9BYT5 123 aa5.75□□□□□ -1.49
USP54-208ENST00000461520 BARHL1Q9BZE3 327 aa5.75□□□□□ -1.49
USP54-208ENST00000461520 PPIL3Q9H2H8 161 aaKnown RBP5.75□□□□□ -1.49
USP54-208ENST00000461520 ISG20L2Q9H9L3 353 aaKnown RBP5.75□□□□□ -1.49
USP54-208ENST00000461520 PCDHB16Q9NRJ7 776 aa5.75□□□□□ -1.49
USP54-208ENST00000461520 MSRB1Q9NZV6 116 aa5.75□□□□□ -1.49
USP54-208ENST00000461520 DHDHQ9UQ10 334 aa5.75□□□□□ -1.49
USP54-208ENST00000461520 RPL36Q9Y3U8 105 aaKnown RBP5.75□□□□□ -1.49
USP54-208ENST00000461520 TSSC4Q9Y5U2 329 aaPredicted RBP5.75□□□□□ -1.49
USP54-208ENST00000461520 MEIKINA0A087WXM9 373 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 TRAV24A0A0B4J272 114 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 LOC100130705A0A1B0GUX0 176 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 TCRBV4S1A1TA0A5B7 111 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A18PA6NE21 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A16PA6NEW6 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A20PA6NIJ5 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A9PA6NNJ1 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A12PA8MX19 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A5PA8MXJ8 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 NPIPB11E5RHQ5 1161 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 E9PI62 339 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 J3QR06 171 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 NDUFB8O95169 186 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A15PP0C7V4 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A13PP0C7W8 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A14PP0C7W9 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 FAM90A24PP0C7X0 464 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 RAB3AP20336 220 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 GLP1RP43220 463 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 OR3A4PP47883 348 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 KCNJ3P48549 501 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 RBM39Q14498 530 aaKnown RBP5.74□□□□□ -1.49
USP54-208ENST00000461520 CCDC58Q4VC31 144 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 PAN3Q58A45 887 aaKnown RBP5.74□□□□□ -1.49
USP54-208ENST00000461520 TCTEX1D4Q5JR98 221 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 ASCL4Q6XD76 172 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 SLC16A12Q6ZSM3 486 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 Q8NFD4 153 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 OR10A7Q8NGE5 316 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 OR13A1Q8NGR1 328 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 CNIH3Q8TBE1 160 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 TSEN15Q8WW01 171 aaKnown RBP5.74□□□□□ -1.49
USP54-208ENST00000461520 RPEQ96AT9 228 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 GPER1Q99527 375 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 PDCD1LG2Q9BQ51 273 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 LINC00574Q9H8X3 128 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 AMBNQ9NP70 447 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 CALYQ9NYX4 217 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 IDI2-AS1Q9NZ38 188 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 AASSQ9UDR5 926 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 KIF25Q9UIL4 384 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 MOB4Q9Y3A3 225 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 AMMECR1Q9Y4X0 333 aaPredicted RBP5.74□□□□□ -1.49
USP54-208ENST00000461520 HSPE1-MOB4S4R3N1 261 aa5.74□□□□□ -1.49
USP54-208ENST00000461520 GABRPO00591 440 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 HSPB6O14558 160 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 DUS4LO95620 317 aaKnown RBP5.73□□□□□ -1.49
USP54-208ENST00000461520 CLIC3O95833 236 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 IL1AP01583 271 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 CD2P06729 351 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 IGLL1P15814 213 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 NFYBP25208 207 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 SOX2P48431 317 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 RAB7AP51149 207 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 SLC35A2P78381 396 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 MADCAM1Q13477 382 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 RSU1Q15404 277 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 ZSCAN26Q16670 478 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 NHLRC3Q5JS37 347 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 C9orf152Q5JTZ5 239 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 RSBN1Q5VWQ0 802 aaPredicted RBP5.73□□□□□ -1.49
USP54-208ENST00000461520 LPCAT4Q643R3 524 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 RPL22L1Q6P5R6 122 aaKnown RBP5.73□□□□□ -1.49
USP54-208ENST00000461520 CCDC121Q6ZUS5 278 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 SATL1Q86VE3 508 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 OR8H3Q8N146 312 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 OSR2Q8N2R0 312 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 OR51A2Q8NGJ7 313 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 OR52I1Q8NGK6 324 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 GPR148Q8TDV2 347 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 TNFAIP8L1Q8WVP5 186 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 MYDGFQ969H8 173 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 TOMM40LQ969M1 308 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 TMEM106AQ96A25 262 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 NR1H4Q96RI1 486 aaPredicted RBP5.73□□□□□ -1.49
USP54-208ENST00000461520 SLC29A1Q99808 456 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 HIPK2Q9H2X6 1198 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.73□□□□□ -1.49
USP54-208ENST00000461520 FAM118AQ9NWS6 357 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 IL36GQ9NZH8 169 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 PSG11Q9UQ72 335 aa5.73□□□□□ -1.49
USP54-208ENST00000461520 TMEM272A0A1B0GTI8 110 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 A0A1W2PPI3 338 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 PSMB11A5LHX3 300 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 SH2D7A6NKC9 451 aaPredicted RBP5.72□□□□□ -1.49
USP54-208ENST00000461520 FGF16O43320 207 aa5.72□□□□□ -1.49
USP54-208ENST00000461520 ZNF780AO75290 641 aaPredicted RBP5.72□□□□□ -1.49
USP54-208ENST00000461520 CSTBP04080 98 aaKnown RBP5.72□□□□□ -1.49
USP54-208ENST00000461520 SNRNP70P08621 437 aaKnown RBP5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms