RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 OR4X1Q8NH49 305 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 ADAMTS17Q8TE56 1095 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 COL8A1P27658 744 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 ELOBQ15370 118 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 C1QL3Q5VWW1 255 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 PRNTQ86SH4 94 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 ATG4DQ86TL0 474 aaPredicted RBP10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF721Q8TF20 911 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 SYNGR1O43759 233 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 PPP1CCP36873 323 aaKnown RBP10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 HERVK_113P61574 105 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 PSG5Q15238 335 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 DEGS2Q6QHC5 323 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 OIT3Q8WWZ8 545 aa10.55□□□□□ -0.72
CCDC88A-207ENST00000436346 A0A1W2PQD3 144 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 MPC2O95563 127 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 SMIM12Q96EX1 92 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 C16orf92Q96LL3 132 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 IGHV3OR16-12A0A075B7B8 117 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 RAB29O14966 203 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 SFT2D2O95562 160 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 HLA-DRB3P79483 266 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 CTF1Q16619 201 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 HIGD1AQ9Y241 93 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 COL4A5P29400 1685 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 CELA2AP08217 269 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 ROM1Q03395 351 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 CHST5Q9GZS9 411 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 CBY3A6NI87 242 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 KIR2DL1P43626 348 aaPredicted RBP10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 GABRA6Q16445 453 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF770Q6IQ21 691 aaPredicted RBP10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 TEX29Q8N6K0 151 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 IGHV1-45A0A0A0MS14 117 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 TRAV34A0A0B4J273 112 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 IL13RA2Q14627 380 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 OR2W1Q9Y3N9 320 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 SULT1A1P50225 295 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 PMS2CLQ68D20 193 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 SLC2A9Q9NRM0 540 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 TFPI2P48307 235 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 TCL1AP56279 114 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 PLPPR5Q32ZL2 321 aa10.54□□□□□ -0.72
CCDC88A-207ENST00000436346 PRSS1P07477 247 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 ISXQ2M1V0 245 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 OR1N2Q8NGR9 330 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 CRISP2P16562 243 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 ATP6V1FQ16864 119 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 FHL5Q5TD97 284 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF561Q8N587 486 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 ZCCHC14Q8WYQ9 949 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 ALG14Q96F25 216 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 ZMAT5Q9UDW3 170 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 C5orf52A6NGY3 159 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 H3BVH4 76 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 SRSF10O75494 262 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 CLDN18P56856 261 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 FAM78BQ5VT40 261 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 EBLN2Q6P2I7 272 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 Q6ZNX1 250 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 OR1L8Q8NGR8 309 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 OR10AC1Q8NH08 325 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 TMEM167BQ9NRX6 74 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 TCRBV16S1A1N1A0A5B0 115 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 IGHV4-34P06331 123 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 COL19A1Q14993 1142 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 CD300LDQ6UXZ3 194 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 PRR19A6NJB7 356 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 CGB1A6NKQ9 187 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 PPOXP50336 477 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 RIGQ13278 110 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 C12orf57Q99622 126 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 DDA1Q9BW61 102 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 MAP1LC3CQ9BXW4 147 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 TOLLIPQ9H0E2 274 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 FBXL17Q9UF56 701 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 M0R3E3 92 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 SMPD2O60906 423 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 SMAGPQ0VAQ4 97 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 TEX30Q5JUR7 227 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 RPS4Y2Q8TD47 263 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 OR4C46A6NHA9 309 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 CXorf1O96002 111 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 RAB32Q13637 225 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 GSX1Q9H4S2 264 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 RBFOX3A6NFN3 312 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 FAM87AP0C7U9 286 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 ZNF273Q14593 569 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 LYRM7Q5U5X0 104 aa10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 NFAM1Q8NET5 270 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-207ENST00000436346 GPR6P46095 362 aaPredicted RBP10.52□□□□□ -0.72
CCDC88A-207ENST00000436346 OR4A5Q8NH83 315 aa10.52□□□□□ -0.72
CCDC88A-207ENST00000436346 LOC389332A0A1B0GUA5 103 aa10.52□□□□□ -0.72
CCDC88A-207ENST00000436346 HELTA6NFD8 242 aa10.52□□□□□ -0.72
CCDC88A-207ENST00000436346 HPXP02790 462 aa10.52□□□□□ -0.72
CCDC88A-207ENST00000436346 Q6ZN92 141 aa10.52□□□□□ -0.72
CCDC88A-207ENST00000436346 TTC28Q96AY4 2481 aa10.52□□□□□ -0.72
CCDC88A-207ENST00000436346 ARHGAP32A7KAX9 2087 aa10.52□□□□□ -0.72
CCDC88A-207ENST00000436346 CHST1O43916 411 aa10.52□□□□□ -0.73
CCDC88A-207ENST00000436346 AANATQ16613 207 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms