RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 RAB3AP20336 220 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 PRDX2P32119 198 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 TGFBR2P37173 567 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 RBMXP38159 391 aaKnown RBP2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CAPZA1P52907 286 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CAV3P56539 151 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 BPIFB3P59826 476 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CX3CL1P78423 397 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 PAX2Q02962 417 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 SCN1BQ07699 218 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 PDZK1IP1Q13113 114 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 TPBGQ13641 420 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 SPHARQ15513 63 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 SMIM21Q3B7S5 101 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 Q499Y3 187 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF876PQ49A33 203 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 LRRC10Q5BKY1 277 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 DMRTC1Q5HYR2 192 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 STUMQ69YW2 141 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 XAF1Q6GPH4 301 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 UNQ9370/PRO34162Q6UXP9 181 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 PRSS48Q7RTY5 328 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 ANGPTL5Q86XS5 388 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CALHM1Q8IU99 346 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CDH26Q8IXH8 852 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 ZSCAN4Q8NAM6 433 aaPredicted RBP2.02□□□□□ -2.09
VPS13A-208ENST00000423463 LY6G5BQ8NDX9 201 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 OR5T2Q8NGG2 359 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 OR51A4Q8NGJ6 313 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 OR13C9Q8NGT0 318 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 NANPQ8TBE9 248 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 NPRL2Q8WTW4 380 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 TSEN15Q8WW01 171 aaKnown RBP2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CPNE2Q96FN4 548 aaPredicted RBP2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CEP19Q96LK0 163 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CNBD2Q96M20 576 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF184Q99676 751 aaPredicted RBP2.02□□□□□ -2.09
VPS13A-208ENST00000423463 MND1Q9BWT6 205 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 WDR13Q9H1Z4 485 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 HES4Q9HCC6 221 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM138Q9NPI0 162 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 MMP26Q9NRE1 261 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 MTCH1Q9NZJ7 389 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CTSZQ9UBR2 303 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 OPN4Q9UHM6 478 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF222Q9UK12 451 aa2.02□□□□□ -2.09
VPS13A-208ENST00000423463 CR1P17927 2039 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 CHD3Q12873 2000 aaKnown RBP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 IGKV1D-17A0A075B6S4 117 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 IGKV1-27A0A075B6S5 117 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 TRAV34A0A0B4J273 112 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 RFPL4AA6NLU0 287 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 RFPL4AL1F8VTS6 287 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 APOHP02749 345 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 HCKP08631 526 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 CELP19835 753 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 MAPK3P27361 379 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 GABRA2P47869 451 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 POU3F4P49335 361 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 BMXP51813 675 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 GABARAPL2P60520 117 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 RPS11P62280 158 aaKnown RBP eCLIP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 PPP3R1P63098 170 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 TRAM1Q15629 374 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 KISS1Q15726 138 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 ELP2Q6IA86 826 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 SLC35E4Q6ICL7 350 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 FIP1L1Q6UN15 594 aaKnown RBP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 ASCL4Q6XD76 172 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 SLC25A26Q70HW3 274 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 BTN2A1Q7KYR7 527 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 FAM58AQ8N1B3 248 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF561Q8N587 486 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 CD177Q8N6Q3 437 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 PXT1Q8NFP0 134 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 OR5D13Q8NGL4 314 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 C8orf46Q8TAG6 207 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 RGP1Q92546 391 aaPredicted RBP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 PHYHIPQ92561 330 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 TMEM106AQ96A25 262 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 UPRTQ96BW1 309 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 SEH1LQ96EE3 360 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 PGLYRP3Q96LB9 341 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 ZNF488Q96MN9 340 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 GAFA1Q96PS6 74 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 DCTN5Q9BTE1 182 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 CKLFQ9UBR5 152 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 GLS2Q9UI32 602 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 RPUSD1Q9UJJ7 312 aaKnown RBP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 FOXJ3Q9UPW0 622 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 TCF19Q9Y242 345 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 LSM2Q9Y333 95 aaKnown RBP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 LRRC42Q9Y546 428 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 MAB21L2Q9Y586 359 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 POMT1Q9Y6A1 747 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 YLPM1P49750 1951 aaKnown RBP2.01□□□□□ -2.09
VPS13A-208ENST00000423463 MALRD1Q5VYJ5 2156 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 A0A1W2PN81 502 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 FUOMA2VDF0 154 aa2.01□□□□□ -2.09
VPS13A-208ENST00000423463 SMIM1B2RUZ4 78 aa2.01□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms