RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 CACFD1Q9UGQ2 172 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 C21orf140B9A014 251 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 PSPNO60542 156 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 H2AFB1P0C5Y9 115 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 SSTR5P35346 364 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 P2RY1P47900 373 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 ZNF83P51522 516 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 RNPS1Q15287 305 aaKnown RBP11.36□□□□□ -0.59
VPS54-203ENST00000409558 ZNF674Q2M3X9 581 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 PEAR1Q5VY43 1037 aaPredicted RBP11.36□□□□□ -0.59
VPS54-203ENST00000409558 BTNL8Q6UX41 500 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 IL34Q6ZMJ4 242 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 POMT1Q9Y6A1 747 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 KALRNO60229 2985 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 DVL1P1P54792 670 aaPredicted RBP11.36□□□□□ -0.59
VPS54-203ENST00000409558 EDDM3BP56851 147 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 SOHLH1Q5JUK2 328 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 RPRMLQ8N4K4 120 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 NANOS1Q8WY41 292 aaKnown RBP11.36□□□□□ -0.59
VPS54-203ENST00000409558 OR2D2Q9H210 308 aa11.36□□□□□ -0.59
VPS54-203ENST00000409558 TACC2O95359 2948 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 CD55P08174 381 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 TGFBR3Q03167 851 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 TMEM178AQ8NBL3 297 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 RTL8AQ9BWD3 113 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 SEC11CQ9BY50 192 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 VSIRQ9H7M9 311 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 ZNF391Q9UJN7 358 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 OR2W1Q9Y3N9 320 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 OR5H1A6NKK0 313 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 RAMP3O60896 148 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 F2RP25116 425 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 TESK1Q15569 626 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 COLCA1Q6ZS62 124 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 IGKV3D-15A0A087WSY6 115 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 ZNF806P0C7X5 589 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 MRPL49Q13405 166 aaKnown RBP11.35□□□□□ -0.59
VPS54-203ENST00000409558 OR2Z1Q8NG97 314 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 SPSB4Q96A44 273 aa11.35□□□□□ -0.59
VPS54-203ENST00000409558 ZNF343Q6P1L6 599 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 UBAC2Q8NBM4 344 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 BCL2L2Q92843 193 aaPredicted RBP11.34□□□□□ -0.59
VPS54-203ENST00000409558 TMEM45BQ96B21 275 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 SPIN2AQ99865 258 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 SPIN2BQ9BPZ2 258 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 SPRY4Q9C004 299 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 NAPSAO96009 420 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 CTRB1P17538 263 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 SNCAP37840 140 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 AVPI1Q5T686 147 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 CTRB2Q6GPI1 263 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 STX12Q86Y82 276 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 VKORC1L1Q8N0U8 176 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 KLF14Q8TD94 323 aaPredicted RBP11.34□□□□□ -0.59
VPS54-203ENST00000409558 SAT2Q96F10 170 aaPredicted RBP11.34□□□□□ -0.59
VPS54-203ENST00000409558 HINT2Q9BX68 163 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 TNRC6AQ8NDV7 1962 aaKnown RBP11.34□□□□□ -0.59
VPS54-203ENST00000409558 YLPM1P49750 1951 aaKnown RBP11.34□□□□□ -0.59
VPS54-203ENST00000409558 NCOR2Q9Y618 2525 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 ST8SIA5O15466 376 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 VDAC1P21796 283 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 GLIPR1P48060 266 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 UCP2P55851 309 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 RAB11AP62491 216 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 HFEQ30201 348 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 PCSK4Q6UW60 755 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 ASCL4Q6XD76 172 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 C9orf106Q8NAJ2 232 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 TCTEX1D2Q8WW35 142 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 IER2Q9BTL4 223 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 PLEKHF2Q9H8W4 249 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 CLN8Q9UBY8 286 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 UBE2L5PA0A1B0GUS4 154 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 SMCO3A2RU48 225 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 RPS10P46783 165 aaKnown RBP11.34□□□□□ -0.59
VPS54-203ENST00000409558 ZNF610Q8N9Z0 462 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 OR4D5Q8NGN0 318 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 NINJ1Q92982 152 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 SDSLQ96GA7 329 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 PARP11Q9NR21 331 aa11.34□□□□□ -0.59
VPS54-203ENST00000409558 SMPD2O60906 423 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 FTH1P19P0C7X4 201 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 DANCRP0C864 163 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 RPL23AP62750 156 aaKnown RBP11.33□□□□□ -0.6
VPS54-203ENST00000409558 HLA-DRB3P79483 266 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 IL13RA2Q14627 380 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 SLC16A13Q7RTY0 426 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 SCGB1C1Q8TD33 95 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 PSENENQ9NZ42 101 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 RALYQ9UKM9 306 aaKnown RBP11.33□□□□□ -0.6
VPS54-203ENST00000409558 TNCP24821 2201 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 IFNA5P01569 189 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 HEXAP06865 529 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 TNFSF10P50591 281 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 C4orf17Q53FE4 359 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 LRP11Q86VZ4 500 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 CCDC54Q8NEL0 328 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 PSG11Q9UQ72 335 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 SPRY3O43610 288 aa11.33□□□□□ -0.6
VPS54-203ENST00000409558 CA11O75493 328 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms