RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 JPT1Q9UK76 154 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 PITPNC1Q9UKF7 332 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 MGAT4AQ9UM21 535 aa17.49■□□□□ 0.39
CLN3-207ENST00000395653 A0A1B0GUS0 222 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 MFNGO00587 321 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 BRS3P32247 399 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 TGFBR1P36897 503 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 LSM3P62310 102 aaKnown RBP17.48■□□□□ 0.39
CLN3-207ENST00000395653 CROCCP3Q8IVE0 287 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 ZNF439Q8NDP4 499 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 RPEQ96AT9 228 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 GALMQ96C23 342 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 OCSTAMPQ9BR26 566 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 ATG5Q9H1Y0 275 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 OR2S2Q9NQN1 319 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 KCNK7Q9Y2U2 307 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 MMP24Q9Y5R2 645 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 ETV7Q9Y603 341 aa17.48■□□□□ 0.39
CLN3-207ENST00000395653 A0A1W2PPE3 182 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 A6NDX4 124 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 SCGNO76038 276 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 HIST1H1DP16402 221 aaKnown RBP17.47■□□□□ 0.39
CLN3-207ENST00000395653 MNDAP41218 407 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 ARL6IP1Q15041 203 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 IDNKQ5T6J7 187 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 OLFML2AQ68BL7 652 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 FAM53AQ6NSI3 398 aaPredicted RBP17.47■□□□□ 0.39
CLN3-207ENST00000395653 OR10V1Q8NGI7 309 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 SETD6Q8TBK2 473 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 TOMM40LQ969M1 308 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 ANK2Q01484 3957 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 RAB7AP51149 207 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 MRPS15P82914 257 aaKnown RBP17.47■□□□□ 0.39
CLN3-207ENST00000395653 STEAP3Q658P3 488 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 SLC25A48Q6ZT89 311 aaKnown RBP17.47■□□□□ 0.39
CLN3-207ENST00000395653 BEX1Q9HBH7 125 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 Q9N2K0 584 aa17.47■□□□□ 0.39
CLN3-207ENST00000395653 SERPINE3A8MV23 424 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 CHST1O43916 411 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 YPEL1O60688 119 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 TSPAN9O75954 239 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 CD3GP09693 182 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 GNB3P16520 340 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 MDKP21741 143 aaPredicted RBP17.46■□□□□ 0.39
CLN3-207ENST00000395653 RPS19P39019 145 aaKnown RBP17.46■□□□□ 0.39
CLN3-207ENST00000395653 MORN2Q502X0 79 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 LY6G6FQ5SQ64 297 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 CCBE1Q6UXH8 406 aaPredicted RBP17.46■□□□□ 0.39
CLN3-207ENST00000395653 Q6ZSV7 163 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 C5orf24Q7Z6I8 188 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 OR52L2PQ8NGH6 319 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 YPEL2Q96QA6 119 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.46■□□□□ 0.39
CLN3-207ENST00000395653 RHBDL2Q9NX52 303 aa17.46■□□□□ 0.39
CLN3-207ENST00000395653 RGS11O94810 467 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 IL3RAP26951 378 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 ALDH3B2P48448 385 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 ZNF134P52741 427 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 HLA-DRB3P79483 266 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 ZNF816Q0VGE8 651 aaPredicted RBP17.45■□□□□ 0.38
CLN3-207ENST00000395653 GNMTQ14749 295 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 ANKRD13BQ86YJ7 626 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 OR8H3Q8N146 312 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 C3orf56Q8N813 242 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 OR5H6Q8NGV6 325 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 C16orf95Q9H693 158 aa17.45■□□□□ 0.38
CLN3-207ENST00000395653 RANBP3Q9H6Z4 567 aaPredicted RBP17.45■□□□□ 0.38
CLN3-207ENST00000395653 A0A075B6Q4 140 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 A0A1W2PPI3 338 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 HSD17B6O14756 317 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 SLC31A2O15432 143 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 TFAP2AP05549 437 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 PPP1CCP36873 323 aaKnown RBP17.44■□□□□ 0.38
CLN3-207ENST00000395653 ZNF137PP52743 207 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 NCS1P62166 190 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 DIAPH2-AS1Q14236 149 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 CT45A1Q5HYN5 189 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 CT45A3Q8NHU0 189 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 IL1F10Q8WWZ1 152 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 SPATA2Q9UM82 520 aa17.44■□□□□ 0.38
CLN3-207ENST00000395653 CLPSL1A2RUU4 121 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 GABARAPO95166 117 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 SERPINB10P48595 397 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 VBP1P61758 197 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 TMEM219Q86XT9 240 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 LINC01006Q8NI28 216 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 ST6GALNAC6Q969X2 333 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 SLC25A46Q96AG3 418 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 SLC25A38Q96DW6 304 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 ABHD14AQ9BUJ0 271 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 NPFFR1Q9GZQ6 430 aa17.43■□□□□ 0.38
CLN3-207ENST00000395653 GAPDHP04406 335 aaKnown RBP17.42■□□□□ 0.38
CLN3-207ENST00000395653 FCGR3AP08637 254 aa17.42■□□□□ 0.38
CLN3-207ENST00000395653 CDNFQ49AH0 187 aa17.42■□□□□ 0.38
CLN3-207ENST00000395653 C16orf82Q7Z2V1 217 aa17.42■□□□□ 0.38
CLN3-207ENST00000395653 THNSL2Q86YJ6 484 aa17.42■□□□□ 0.38
CLN3-207ENST00000395653 OR4C13Q8NGP0 309 aa17.42■□□□□ 0.38
CLN3-207ENST00000395653 CFHR4Q92496 578 aa17.42■□□□□ 0.38
CLN3-207ENST00000395653 ZNF747Q9BV97 191 aa17.42■□□□□ 0.38
CLN3-207ENST00000395653 FAM90A9PA6NNJ1 464 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms