RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 SSX8Q7RTT4 187 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 OR1L6Q8NGR2 347 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 LRRC29Q8WV35 223 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 TAAR6Q96RI8 345 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 VPS13AQ96RL7 3174 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 KIF26BQ2KJY2 2108 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 IGHV1OR21-1A0A087WYE8 117 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 NGFRP08138 427 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 LYZP61626 148 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 AESQ08117 197 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 OR1C1Q15619 314 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 ANKRD55Q3KP44 614 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 LILRB1Q8NHL6 650 aaPredicted RBP7.6□□□□□ -1.19
RTN3-202ENST00000339997 UFC1Q9Y3C8 167 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 A0A1W2PPC1 479 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 MSGN1A6NI15 193 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 LINC00587B1AMM8 73 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 NPY1RP25929 384 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 SPCS3P61009 180 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 RPEL1Q2QD12 228 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 TMEM251Q8N6I4 163 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 OR13G1Q8NGZ3 307 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 KISS1RQ969F8 398 aaPredicted RBP7.6□□□□□ -1.19
RTN3-202ENST00000339997 RAB37Q96AX2 223 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 VAX2Q9UIW0 290 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 KCNE5Q9UJ90 142 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 PROCRQ9UNN8 238 aa7.6□□□□□ -1.19
RTN3-202ENST00000339997 SF3B6Q9Y3B4 125 aaKnown RBP7.6□□□□□ -1.19
RTN3-202ENST00000339997 C5orf52A6NGY3 159 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 C4orf51C9J302 202 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 DIRC3C9JPN6 131 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 PTP4A3O75365 173 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 AGFG2O95081 481 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 PEBP1P30086 187 aaKnown RBP7.59□□□□□ -1.19
RTN3-202ENST00000339997 TMEM50BP56557 158 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 PKIAP61925 76 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 IL24Q13007 206 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 ELOBQ15370 118 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 SLC35E3Q7Z769 313 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 ASB10Q8WXI3 467 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 COX14Q96I36 57 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 RASL10BQ96S79 203 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 ARID2Q68CP9 1835 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 TEX50A0A1B0GTY4 177 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 H3BTX0 84 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 GLULP15104 373 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 MFAP2P55001 183 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 ACER2Q5QJU3 275 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 OR4C12Q96R67 309 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 GLRX2Q9NS18 164 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 OR6C3Q9NZP0 311 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 TP53BP1Q12888 1972 aaPredicted RBP7.59□□□□□ -1.19
RTN3-202ENST00000339997 MPTX1A8MV57 137 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 SCTP09683 121 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 FKBP2P26885 142 aaKnown RBP7.59□□□□□ -1.19
RTN3-202ENST00000339997 P2RY1P47900 373 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 P2RY4P51582 365 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 ZP1P60852 638 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 HIKESHIQ53FT3 197 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 NHLRC3Q5JS37 347 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 ANKRD37Q7Z713 158 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 TMEM252Q8N6L7 170 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 OR52M1Q8NGK5 317 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 PTPMT1Q8WUK0 201 aaPredicted RBP7.59□□□□□ -1.19
RTN3-202ENST00000339997 PITPNC1Q9UKF7 332 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 SLC45A2Q9UMX9 530 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 STARD10Q9Y365 291 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 NOTCH2Q04721 2471 aa7.59□□□□□ -1.19
RTN3-202ENST00000339997 RPLP1P05386 114 aaKnown RBP7.58□□□□□ -1.2
RTN3-202ENST00000339997 CELA2AP08217 269 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 CCL3P10147 92 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 DDTP30046 118 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 RHOBP62745 196 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 FXYD3Q14802 87 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 ARRDC1-AS1Q9H2J1 176 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 LYRM2Q9NU23 88 aaPredicted RBP7.58□□□□□ -1.2
RTN3-202ENST00000339997 OTOFQ9HC10 1997 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 PCNX2A6NKB5 2137 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 TNS1Q9HBL0 1735 aaKnown RBP7.58□□□□□ -1.2
RTN3-202ENST00000339997 LIPT2A6NK58 231 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 MDH2P40926 338 aaKnown RBP7.58□□□□□ -1.2
RTN3-202ENST00000339997 ZNF260Q3ZCT1 412 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 OVCH2Q7RTZ1 564 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 FAM216AQ8WUB2 273 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 ABHD14BQ96IU4 210 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 EAF1Q96JC9 268 aaPredicted RBP7.58□□□□□ -1.2
RTN3-202ENST00000339997 TMEM147Q9BVK8 224 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 PARP11Q9NR21 331 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 CES1P1Q9UKY3 287 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 ARFGEF3Q5TH69 2177 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 TRGV8A0A0C4DH27 118 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 OR5B21A6NL26 309 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 TMPRSS2O15393 492 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 RPS4Y1P22090 263 aaKnown RBP7.58□□□□□ -1.2
RTN3-202ENST00000339997 ZADH2Q8N4Q0 377 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 R3HDM4Q96D70 268 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 SLC26A1Q9H2B4 701 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 GSX1Q9H4S2 264 aaPredicted RBP7.58□□□□□ -1.2
RTN3-202ENST00000339997 LHX9Q9NQ69 397 aa7.58□□□□□ -1.2
RTN3-202ENST00000339997 ZNF638Q14966 1978 aaKnown RBP7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms