RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 NHLH2Q02577 135 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF260Q3ZCT1 412 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 PRSS3P2Q8NHM4 247 aa8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF552Q9H707 407 aaPredicted RBP8.99□□□□□ -0.97
CCDC88A-202ENST00000336838 M0QZ24 198 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 BTF3P20290 206 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 HNF1AP20823 631 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 GGACTQ9BVM4 153 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 PRDM14Q9GZV8 571 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 SERTM2A0A1B0GWG4 89 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 SMPD2O60906 423 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 KIR2DL1P43626 348 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 PRR27Q6MZM9 219 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 IGHV1OR15-9A0A0B4J2B8 117 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 APCSP02743 223 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 LYPD8Q6UX82 237 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 NKX2-6A6NCS4 301 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 TTRP02766 147 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 KCNMB1Q16558 191 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 NPY1RP25929 384 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 RPL29P47914 159 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 ERASQ7Z444 233 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 DUSP15Q9H1R2 295 aaPredicted RBP8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 FBLN5Q9UBX5 448 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 SYNGR1O43759 233 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 GLIPR1P48060 266 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 FUT5Q11128 374 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 UQCR10Q9UDW1 63 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 M0R296 226 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF645Q8N7E2 425 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF738Q8NE65 137 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 GPR35Q9HC97 309 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 TMEM238LA0A1B0GVL6 79 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 A6NJY4 79 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 PEBP1P30086 187 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 HERVK_113P61574 105 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 OR10AD1Q8NGE0 317 aa8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 MARS2Q96GW9 593 aaKnown RBP8.98□□□□□ -0.97
CCDC88A-202ENST00000336838 H2BFSP57053 126 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 LAIR2Q6ISS4 152 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 SLC25A40Q8TBP6 338 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 STARD4Q96DR4 205 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 PMCHL2Q9BQD1 86 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 C2CD4DB7Z1M9 353 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 GYPAP02724 150 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF407Q9C0G0 2248 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 NPIPB9F8W1W9 429 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 TSPAN2O60636 221 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 SRSF10O75494 262 aaKnown RBP8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 OR1L8Q8NGR8 309 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 RAB29O14966 203 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 DDTP30046 118 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 B2MP61769 119 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 PLAC9Q5JTB6 97 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 SLC16A13Q7RTY0 426 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 SDHCQ99643 169 aaPredicted RBP8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 ARG1P05089 322 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 OR2M7Q8NG81 312 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 SMIM8Q96KF7 97 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 NPVFQ9HCQ7 196 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 LHX9Q9NQ69 397 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 C1RLQ9NZP8 487 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 A0A1B0GTH9 108 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 CD1BP29016 333 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 LYZL2Q7Z4W2 148 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 LYG1Q8N1E2 194 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 OR2D3Q8NGH3 330 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 IGLV1-36A0A0B4J1U3 117 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 MS4A18H0YCH9 400 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 SMIM10L1P0DMW3 83 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 MS4A18Q3C1V0 323 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 ZNF383Q8NA42 475 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 COPS9Q8WXC6 57 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 SMIM10Q96HG1 83 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 CHODLQ9H9P2 273 aa8.97□□□□□ -0.97
CCDC88A-202ENST00000336838 HBZP02008 142 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 RD3LP0DJH9 198 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 DCAF12L2Q5VW00 463 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 GP6Q9HCN6 339 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 SLC7A10Q9NS82 523 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 FAM206AQ9NX38 181 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 OR2T8A6NH00 312 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 A8MWL6 223 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 MYOGP15173 224 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 P2RY6Q15077 328 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 C10orf128Q5T292 105 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 OR2M3Q8NG83 312 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 GALNT14Q96FL9 552 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 GNRHR2Q96P88 292 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 C5orf66Q9H5L9 145 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 FAM60AQ9NP50 221 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 IGSF11Q5DX21 431 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 C10orf113Q5VZT2 155 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 PUSL1Q8N0Z8 303 aaKnown RBP8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 ZFP30Q9Y2G7 519 aa8.96□□□□□ -0.97
CCDC88A-202ENST00000336838 FGF8P55075 233 aaPredicted RBP8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 CBY3A6NI87 242 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 EFNB2P52799 333 aa8.96□□□□□ -0.98
CCDC88A-202ENST00000336838 DUSP2Q05923 314 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms