RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 BMP5P22003 454 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 ZNF439Q8NDP4 499 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 PRDM14Q9GZV8 571 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 AKIRIN1Q9H9L7 192 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-201ENST00000323668 GVINP1Q7Z2Y8 2422 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 CEP250Q9BV73 2442 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 SYNGR1O43759 233 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 CTSSP25774 331 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 CD81P60033 236 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 ERVFC1-1P60608 527 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 PATE3B3GLJ2 98 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 PAGE4O60829 102 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 HAND1O96004 215 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 COX6A1P12074 109 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 ZNF766Q5HY98 468 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 MESP1Q9BRJ9 268 aa12.7□□□□□ -0.38
TCOF1-201ENST00000323668 EFNA2O43921 213 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 RTL8BQ17RB0 113 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 BTNL3Q6UXE8 466 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 SAP25Q8TEE9 199 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 IL22RA2Q969J5 263 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 MS4A10Q96PG2 267 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 COMMD5Q9GZQ3 224 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 TINAGQ9UJW2 476 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 IGSF23A1L1A6 192 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 OOEPA6NGQ2 149 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 ENSAO43768 121 aaKnown RBP12.69□□□□□ -0.38
TCOF1-201ENST00000323668 G6PCP35575 357 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 CDX1P47902 265 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-201ENST00000323668 TPPP2P59282 170 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 PHYHD1Q5SRE7 291 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 ZNF837Q96EG3 531 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-201ENST00000323668 DVL1O14640 695 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 RPS23P62266 143 aaKnown RBP12.69□□□□□ -0.38
TCOF1-201ENST00000323668 TRAT1Q6PIZ9 186 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 SAXO1Q8IYX7 474 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 OR2Z1Q8NG97 314 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 TUBA4BQ9H853 241 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 DYNLRB1Q9NP97 96 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 SPTA1P02549 2419 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 NKX6-3A6NJ46 265 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 SYNGR3O43761 229 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 SOX15O60248 233 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 MDKP21741 143 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-201ENST00000323668 FADS6Q8N9I5 356 aa12.69□□□□□ -0.38
TCOF1-201ENST00000323668 KDF1Q8NAX2 398 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-201ENST00000323668 IGKV1D-8A0A087WSZ0 117 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 GATCO43716 136 aaKnown RBP12.68□□□□□ -0.38
TCOF1-201ENST00000323668 SUB1P53999 127 aaKnown RBP eCLIP12.68□□□□□ -0.38
TCOF1-201ENST00000323668 DNM1P46Q6ZS02 220 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 CPEB3Q8NE35 698 aaKnown RBP12.68□□□□□ -0.38
TCOF1-201ENST00000323668 H1FXQ92522 213 aaKnown RBP12.68□□□□□ -0.38
TCOF1-201ENST00000323668 LYZL4Q96KX0 146 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 SMOC1Q9H4F8 434 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 PLXNB3Q9ULL4 1909 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 TANC1Q9C0D5 1861 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 COL4A6Q14031 1691 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 LRRC30A6NM36 301 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 GALR2O43603 387 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-201ENST00000323668 ZIC3O60481 467 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 NTF3P20783 257 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 MEF2BQ02080 365 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-201ENST00000323668 IER2Q9BTL4 223 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 R4GN57 208 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 DNAJC13O75165 2243 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 IGLV3-32A0A0A0MS00 114 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 hCG_38984A0A1B0GV85 526 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 CFHR1Q03591 330 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 GPR61Q9BZJ8 451 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 FUT9Q9Y231 359 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 FBP1P09467 338 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 QRFPP83859 136 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 DMWDQ09019 674 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 FBXW9Q5XUX1 488 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 R3HDM4Q96D70 268 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 OR4C12Q96R67 309 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 DLL3Q9NYJ7 618 aa12.68□□□□□ -0.38
TCOF1-201ENST00000323668 TGIF2-C20orf24A0A0A6YYL0 155 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 DBX1A6NMT0 343 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 PKIAP61925 76 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 ERHP84090 104 aaKnown RBP12.67□□□□□ -0.38
TCOF1-201ENST00000323668 IZUMO4Q1ZYL8 232 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 PMS2CLQ68D20 193 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 LRRC29Q8WV35 223 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 FAM103A1Q9BTL3 118 aaKnown RBP12.67□□□□□ -0.38
TCOF1-201ENST00000323668 CXXC4Q9H2H0 198 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 FZR1Q9UM11 496 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 HELZP42694 1942 aaKnown RBP12.67□□□□□ -0.38
TCOF1-201ENST00000323668 CD5P06127 495 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 HIST1H3AP68431 136 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 PLSCR2Q9NRY7 297 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 C20orf202A1L168 122 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 HOXA6P31267 233 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 COL4A4P53420 1690 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-201ENST00000323668 RHOBP62745 196 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 TOMM20LQ6UXN7 152 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 MDP1Q86V88 176 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 C17orf82Q86X59 251 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-201ENST00000323668 CALHM1Q8IU99 346 aa12.67□□□□□ -0.38
TCOF1-201ENST00000323668 MAFAQ8NHW3 353 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms