RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 HBZP02008 142 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 MFAP2P55001 183 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 SMIM12Q96EX1 92 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 TXNDC17Q9BRA2 123 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 TMEM222Q9H0R3 208 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 ZNF665Q9H7R5 613 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 KCNE5Q9UJ90 142 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 H0Y980 276 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 TMEM92Q6UXU6 159 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 MRPL37Q9BZE1 423 aaKnown RBP15.12■□□□□ 0.01
SYNPO-201ENST00000307662 WBP1LQ9NX94 342 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 CDC42EP3Q9UKI2 254 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 ARID1AO14497 2285 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 MNX1P50219 401 aaPredicted RBP15.12■□□□□ 0.01
SYNPO-201ENST00000307662 OR2M3Q8NG83 312 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 RARRES2Q99969 163 aa15.12■□□□□ 0.01
SYNPO-201ENST00000307662 TRBV5-7A0A0A0MS05 114 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 NPIPB9F8W1W9 429 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 H3BVH4 76 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 ORM1P02763 201 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 C12orf54Q6X4T0 127 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 GRAMD2BQ96HH9 432 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 C1orf100Q5SVJ3 147 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 COL25A1Q9BXS0 654 aaPredicted RBP15.11■□□□□ 0.01
SYNPO-201ENST00000307662 CISD1Q9NZ45 108 aaKnown RBP15.11■□□□□ 0.01
SYNPO-201ENST00000307662 DTX4Q9Y2E6 619 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 MYOZ3Q8TDC0 251 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 M0R296 226 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 IGKV1D-16P01601 117 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 RND3P61587 244 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 ZP4Q12836 540 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 GPR35Q9HC97 309 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 TMEM140Q9NV12 185 aa15.11■□□□□ 0.01
SYNPO-201ENST00000307662 TRAV39A0A0B4J263 110 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 TRAV17A0A0B4J275 112 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 PCP4P48539 62 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 SSPNQ14714 243 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 TMEM52Q8NDY8 209 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 SLC25A33Q9BSK2 321 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 SYNGR1O43759 233 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 UPK3AO75631 287 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 TRGC1P0CF51 173 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 CD40P25942 277 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 CD82P27701 267 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 SAP30LQ9HAJ7 183 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 YBX2Q9Y2T7 364 aaKnown RBP15.1■□□□□ 0.01
SYNPO-201ENST00000307662 A0A0U1RQV5 110 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 DANCRP0C864 163 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 NMUP48645 174 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 UNQ9370/PRO34162Q6UXP9 181 aa15.1■□□□□ 0.01
SYNPO-201ENST00000307662 DXOO77932 396 aaKnown RBP15.09■□□□□ 0.01
SYNPO-201ENST00000307662 PEBP1P30086 187 aaKnown RBP15.09■□□□□ 0.01
SYNPO-201ENST00000307662 CLDN18P56856 261 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 ROM1Q03395 351 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 TGIF2LYQ8IUE0 185 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 CBLN4Q9NTU7 201 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 PIPOXQ9P0Z9 390 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 FBLL1A6NHQ2 334 aaKnown RBP15.09■□□□□ 0.01
SYNPO-201ENST00000307662 PIN1P1O15428 100 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 PPP1CCP36873 323 aaKnown RBP15.09■□□□□ 0.01
SYNPO-201ENST00000307662 WNT5AP41221 380 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 FUT5Q11128 374 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 WDR25Q64LD2 544 aaPredicted RBP15.09■□□□□ 0.01
SYNPO-201ENST00000307662 CCL17Q92583 94 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 PXMP4Q9Y6I8 212 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 KIAA1217Q5T5P2 1943 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 OR4C46A6NHA9 309 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 COX7A1P24310 79 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 MCM3APO60318 1980 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 FOCADQ5VW36 1801 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 HLA-DQA1P01909 254 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 ISG15P05161 165 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 ID4P47928 161 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 APCDD1LQ8NCL9 501 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 RASL11BQ9BPW5 248 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 MRPL18Q9H0U6 180 aaKnown RBP15.09■□□□□ 0.01
SYNPO-201ENST00000307662 NPVFQ9HCQ7 196 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 TRIP11Q15643 1979 aa15.09■□□□□ 0.01
SYNPO-201ENST00000307662 GLIPR1P48060 266 aa15.08■□□□□ 0.01
SYNPO-201ENST00000307662 SLC35B1P78383 322 aa15.08■□□□□ 0.01
SYNPO-201ENST00000307662 TUSC5Q8IXB3 177 aa15.08■□□□□ 0.01
SYNPO-201ENST00000307662 GBGT1Q8N5D6 347 aa15.08■□□□□ 0.01
SYNPO-201ENST00000307662 ABHD3Q8WU67 409 aa15.08■□□□□ 0.01
SYNPO-201ENST00000307662 WFDC6Q9BQY6 131 aa15.08■□□□□ 0.01
SYNPO-201ENST00000307662 IER2Q9BTL4 223 aa15.08■□□□□ 0.01
SYNPO-201ENST00000307662 CRISPLD2Q9H0B8 497 aa15.08■□□□□ 0.01
SYNPO-201ENST00000307662 A0A0B4J293 547 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 MPDU1O75352 247 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 FABP2P12104 132 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 PLP1P60201 277 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 C9orf40Q8IXQ3 194 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 OR8I2Q8N0Y5 310 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 NFAM1Q8NET5 270 aaPredicted RBP15.08■□□□□ 0
SYNPO-201ENST00000307662 PAXXQ9BUH6 204 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 TINAGQ9UJW2 476 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 CRYABP02511 175 aaKnown RBP15.08■□□□□ 0
SYNPO-201ENST00000307662 CEACAM3P40198 252 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 COMPP49747 757 aaPredicted RBP15.08■□□□□ 0
SYNPO-201ENST00000307662 SFTPA1Q8IWL2 248 aa15.08■□□□□ 0
SYNPO-201ENST00000307662 ASCL3Q9NQ33 180 aa15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms