RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 GUCA2BQ16661 112 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 PUSL1Q8N0Z8 303 aaKnown RBP9.34□□□□□ -0.91
CD44-201ENST00000263398 RGP1Q92546 391 aaPredicted RBP9.34□□□□□ -0.91
CD44-201ENST00000263398 ZNF665Q9H7R5 613 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 MSL2Q9HCI7 577 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 LHFPL6Q9Y693 200 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 A0A087X0M5 115 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 A0A1B0GX30 115 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 K7ESF4 209 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 OR2J3O76001 311 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 FAM157CP0CG43 387 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 BCL2P10415 239 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 G0S2P27469 103 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 CRYBA2P53672 197 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 LYZP61626 148 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 IGLV3-21P80748 117 aaPredicted RBP9.34□□□□□ -0.91
CD44-201ENST00000263398 AESQ08117 197 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 SIGLEC14Q08ET2 396 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 TEPPQ6URK8 271 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 TGIF2LYQ8IUE0 185 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 TGIF2LXQ8IUE1 241 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 ABHD14BQ96IU4 210 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 TMEM222Q9H0R3 208 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 SAP30LQ9HAJ7 183 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 KCNAB3O43448 404 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 KLF4O43474 513 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 CD3EP07766 207 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 OR5AL1P0C617 328 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 HOXA6P31267 233 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 H2BFSP57053 126 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 UBE2V2Q15819 145 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 STXBP6Q8NFX7 210 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 OR52L2PQ8NGH6 319 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 OR1K1Q8NGR3 316 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 SRD5A3Q9H8P0 318 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 TUBD1Q9UJT1 453 aa9.34□□□□□ -0.91
CD44-201ENST00000263398 DHRS7CA6NNS2 312 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 H0Y980 276 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 CXorf1O96002 111 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 F12P00748 615 aaPredicted RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 TCL1AP56279 114 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 RUNX1Q01196 453 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 HLA-DRB5Q30154 266 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 SDK2Q58EX2 2172 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 IGSF11Q5DX21 431 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 RIPPLY2Q5TAB7 128 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 PMS2CLQ68D20 193 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 HARBI1Q96MB7 349 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 ZNF488Q96MN9 340 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 AQP10Q96PS8 301 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 SDHCQ99643 169 aaPredicted RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 FAM206AQ9NX38 181 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 HSF4Q9ULV5 492 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 FUT9Q9Y231 359 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 CACNA1DQ01668 2161 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 SPTBN2O15020 2390 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 TDRD6O60522 2096 aaKnown RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 TRAV34A0A0B4J273 112 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 HELTA6NFD8 242 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 NPIPB13A6NJU9 1138 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 NPIPB4C9JG80 1138 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 OR2A4O95047 310 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 C1orf174Q8IYL3 243 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 NFAM1Q8NET5 270 aaPredicted RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 OR4C5Q8NGB2 326 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 APOBEC4Q8WW27 367 aaKnown RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 OR10C1Q96KK4 312 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 OR2A7Q96R45 310 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 TTTY12Q9BZ98 90 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 RAB1BQ9H0U4 201 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 BRCA1P38398 1863 aaKnown RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 M0R143 59 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 LMX1BO60663 402 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 NEURL1O76050 574 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 AGFG2O95081 481 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 BMI1P35226 326 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 PPP1CCP36873 323 aaKnown RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 HIST3H3Q16695 136 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 C19orf48Q6RUI8 117 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 LRP11Q86VZ4 500 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 OR1B1Q8NGR6 318 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 OR1L8Q8NGR8 309 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 CA5BP1Q8WTZ4 195 aa9.33□□□□□ -0.92
CD44-201ENST00000263398 FLYWCH2Q96CP2 140 aaKnown RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 NUDT16L1Q9BRJ7 211 aaKnown RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 SNRNP200O75643 2136 aaKnown RBP9.33□□□□□ -0.92
CD44-201ENST00000263398 FAM90A27PA6NNH2 459 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 CD81P60033 236 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 GAMTQ14353 236 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 C1QTNF12Q5T7M4 302 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 CYB561D1Q8N8Q1 229 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 MARVELD3Q96A59 401 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 MS4A5Q9H3V2 200 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 RGPD4Q7Z3J3 1758 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 SHISA3A0PJX4 238 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 FAM87AP0C7U9 286 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 CD82P27701 267 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 ELOBQ15370 118 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 TMEM255AQ5JRV8 349 aa9.32□□□□□ -0.92
CD44-201ENST00000263398 SLC25A45Q8N413 288 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms