RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 C3AR1Q16581 482 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 OR1K1Q8NGR3 316 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 TUBA4BQ9H853 241 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 Q9N2K0 584 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 WSB1Q9Y6I7 421 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 DOCK11Q5JSL3 2073 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 CYB5BO43169 146 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 HSPA12AO43301 675 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 CYTIPO60759 359 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 PITX3O75364 302 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 SCAF4O95104 1147 aaKnown RBP8.58□□□□□ -1.04
LIG3-201ENST00000262327 CDS2O95674 445 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 MMP7P09237 267 aaPredicted RBP8.58□□□□□ -1.04
LIG3-201ENST00000262327 PSG2P11465 335 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 CEACAM6P40199 344 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 SPATA46Q5T0L3 261 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 DEFB124Q8NES8 71 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 PLPPR1Q8TBJ4 325 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 SF3B5Q9BWJ5 86 aaKnown RBP8.58□□□□□ -1.04
LIG3-201ENST00000262327 GTF3C1Q12789 2109 aa8.58□□□□□ -1.04
LIG3-201ENST00000262327 GJE1A6NN92 205 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 C9orf172C9J069 976 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 HMGB3O15347 200 aaKnown RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 MRPL33O75394 65 aaKnown RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 CNOT4O95628 575 aaKnown RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 SRD5A2P31213 254 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 PAX9P55771 341 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 RPS16P62249 146 aaKnown RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 RAB11AP62491 216 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 Q6ZRM9 215 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 ASCL3Q9NQ33 180 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 DOK5Q9P104 306 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 TAAR3PQ9P1P4 343 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 ERRFI1Q9UJM3 462 aaPredicted RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 CHD3Q12873 2000 aaKnown RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 TRGC2P03986 189 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 METTL15P1P0C7V9 234 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 FTH1P19P0C7X4 201 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 PAX1P15863 534 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 HOXA4Q00056 320 aaPredicted RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 ELOBQ15370 118 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 HIKESHIQ53FT3 197 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 MRPL21Q7Z2W9 205 aaKnown RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 TUSC5Q8IXB3 177 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 LFNGQ8NES3 379 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 M1APQ8TC57 530 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 TMEM56Q96MV1 263 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 SLC25A31Q9H0C2 315 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 ZNF665Q9H7R5 613 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 OR1A1Q9P1Q5 309 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 PPP1R3CQ9UQK1 317 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 TMEM56-RWDD3S4R434 201 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 KIAA1549Q9HCM3 1950 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 A0A1W2PNU3 283 aaPredicted RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 FAM166BA8MTA8 275 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 A8MWP6 167 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 PGLYRP1O75594 196 aaPredicted RBP8.57□□□□□ -1.04
LIG3-201ENST00000262327 CD200P41217 278 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 CLN3Q13286 438 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 CLEC12BQ2HXU8 276 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 NMSQ5H8A3 153 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 GPR146Q96CH1 333 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 NDUFAF3Q9BU61 184 aa8.57□□□□□ -1.04
LIG3-201ENST00000262327 MED12LQ86YW9 2145 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 TRAPPC2LH3BP13 241 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 MKRN2OSH3BPM6 223 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 DLEU1O43261 78 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 VDAC1P21796 283 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 PCBD1P61457 104 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 CLEC2AQ6UVW9 174 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 SSX7Q7RTT5 188 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 TIPARPQ7Z3E1 657 aaKnown RBP8.56□□□□□ -1.04
LIG3-201ENST00000262327 CT55Q8WUE5 264 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 RAB24Q969Q5 203 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 YPEL4Q96NS1 127 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 SPIN2AQ99865 258 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 SPIN2BQ9BPZ2 258 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 TMEM208Q9BTX3 173 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 RBM7Q9Y580 266 aaKnown RBP8.56□□□□□ -1.04
LIG3-201ENST00000262327 C21orf140B9A014 251 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 PHOX2AO14813 284 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 RHBDL1O75783 438 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 SELEP16581 610 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 ELLP55199 621 aaPredicted RBP8.56□□□□□ -1.04
LIG3-201ENST00000262327 ID3Q02535 119 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 ARL16Q0P5N6 197 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 CLDND2Q8NHS1 167 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 ADGRG7Q96K78 797 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 SGCZQ96LD1 299 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 NIPSNAP3BQ9BS92 247 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 C1QTNF5Q9BXJ0 243 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 GPR87Q9BY21 358 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 IL36GQ9NZH8 169 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 KIAA1456Q9P272 454 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 TCFL5Q9UL49 500 aa8.56□□□□□ -1.04
LIG3-201ENST00000262327 NAPSAO96009 420 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 SERPINE2P07093 398 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 MMP9P14780 707 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 RAB1AP62820 205 aa8.55□□□□□ -1.04
LIG3-201ENST00000262327 KRTAP27-1Q3LI81 207 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms