RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 DERL1Q9BUN8 251 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 EML6Q6ZMW3 1958 aa12.3□□□□□ -0.44
SDC1-201ENST00000254351 KIAA1324LA8MWY0 1029 aaPredicted RBP12.29□□□□□ -0.44
SDC1-201ENST00000254351 SPINK4O60575 86 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 PAGE4O60829 102 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 BLKP51451 505 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 CARD18P57730 90 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 NMSQ5H8A3 153 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 DPPA3Q6W0C5 159 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 UBE2ZQ9H832 354 aaPredicted RBP12.29□□□□□ -0.44
SDC1-201ENST00000254351 KCNS2Q9ULS6 477 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 BCL3P20749 454 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 IL24Q13007 206 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.29□□□□□ -0.44
SDC1-201ENST00000254351 TUBG2Q9NRH3 451 aa12.29□□□□□ -0.44
SDC1-201ENST00000254351 DHHO43323 396 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 GYPAP02724 150 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 CDKN1AP38936 164 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 ZNF295-AS1Q8N0V1 137 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 RIMS4Q9H426 269 aaPredicted RBP12.28□□□□□ -0.44
SDC1-201ENST00000254351 RNF115Q9Y4L5 304 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 HS3ST3A1Q9Y663 406 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 ZFHX4Q86UP3 3567 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 A0A0U1RQV5 110 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 LILRA1O75019 489 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 THBS3P49746 956 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 CFHR1Q03591 330 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 RELQ04864 619 aaPredicted RBP12.28□□□□□ -0.44
SDC1-201ENST00000254351 TIPARPQ7Z3E1 657 aaKnown RBP12.28□□□□□ -0.44
SDC1-201ENST00000254351 WDR5BQ86VZ2 330 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 AKIRIN1Q9H9L7 192 aaPredicted RBP12.28□□□□□ -0.44
SDC1-201ENST00000254351 CBY1Q9Y3M2 126 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 C2CD4DB7Z1M9 353 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 WDR1O75083 606 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 PGLYRP1O75594 196 aaPredicted RBP12.28□□□□□ -0.44
SDC1-201ENST00000254351 CLDN1O95832 211 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 HRASP01112 189 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 GPM6AP51674 278 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 CNN3Q15417 329 aaKnown RBP12.28□□□□□ -0.44
SDC1-201ENST00000254351 SLC23A3Q6PIS1 610 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 MRGPRGQ86SM5 289 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 FGFBP3Q8TAT2 258 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 TMEM170AQ8WVE7 144 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 MRGPRX4Q96LA9 322 aa12.28□□□□□ -0.44
SDC1-201ENST00000254351 CD300LBA8K4G0 201 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 TNFSF11O14788 317 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 TIAF1O95411 115 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 ZNF32P17041 273 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 RBM11P57052 281 aaKnown RBP12.27□□□□□ -0.44
SDC1-201ENST00000254351 BAXQ07812 192 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 RAB35Q15286 201 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 ABLIM2Q6H8Q1 611 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 C20orf204Q6ZNR8 217 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 HAPLN4Q86UW8 402 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 OR8G5Q8NG78 346 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 TMEM56Q96MV1 263 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 CDX2Q99626 313 aaPredicted RBP12.27□□□□□ -0.44
SDC1-201ENST00000254351 FSCN3Q9NQT6 498 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 TMEM242Q9NWH2 141 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 TMEM56-RWDD3S4R434 201 aa12.27□□□□□ -0.44
SDC1-201ENST00000254351 DCHS1Q96JQ0 3298 aa12.27□□□□□ -0.45
SDC1-201ENST00000254351 IGKV1-6A0A0C4DH72 117 aa12.27□□□□□ -0.45
SDC1-201ENST00000254351 A0A1B0GX78 115 aa12.27□□□□□ -0.45
SDC1-201ENST00000254351 SIAH2O43255 324 aa12.27□□□□□ -0.45
SDC1-201ENST00000254351 CD38P28907 300 aa12.27□□□□□ -0.45
SDC1-201ENST00000254351 PSMB3P49720 205 aa12.27□□□□□ -0.45
SDC1-201ENST00000254351 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.27□□□□□ -0.45
SDC1-201ENST00000254351 GBGT1Q8N5D6 347 aa12.27□□□□□ -0.45
SDC1-201ENST00000254351 MANBALQ9NQG1 85 aa12.27□□□□□ -0.45
SDC1-201ENST00000254351 RBMXL2O75526 392 aaKnown RBP12.26□□□□□ -0.45
SDC1-201ENST00000254351 C1QTNF9P0C862 333 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 RAB4AP20338 218 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 IL3RAP26951 378 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 CEACAM6P40199 344 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 ERASQ7Z444 233 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 ADPRHL1Q8NDY3 354 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 NABP1Q96AH0 204 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 CTDSP1Q9GZU7 261 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 GPR27Q9NS67 375 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 CRIM1Q9NZV1 1036 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 GDF9O60383 454 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 TUSC2O75896 110 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 IFNA1P01562 189 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 MPLP40238 635 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 SRPXP78539 464 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 SPSB1Q96BD6 273 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 LPAR2Q9HBW0 351 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 OR6C3Q9NZP0 311 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 USF3Q68DE3 2245 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 F2Z2F3 143 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 AQP7O14520 342 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 SYNGR2O43760 224 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 KBTBD11O94819 623 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 C1orf194Q5T5A4 169 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 KIAA0895LQ68EN5 471 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 SP5Q6BEB4 398 aaPredicted RBP12.26□□□□□ -0.45
SDC1-201ENST00000254351 ACSM6Q6P461 480 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 MAML2Q8IZL2 1156 aaPredicted RBP12.26□□□□□ -0.45
SDC1-201ENST00000254351 ZNF525Q8N782 197 aa12.26□□□□□ -0.45
SDC1-201ENST00000254351 DNASE2BQ8WZ79 361 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms