RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 OR10V1Q8NGI7 309 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 PLPPR1Q8TBJ4 325 aa12.65□□□□□ -0.38
PTPRA-201ENST00000216877 PINX1Q96BK5 328 aaKnown RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 SEPSECSQ9HD40 501 aaKnown RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 CHTOPQ9Y3Y2 248 aaKnown RBP12.65□□□□□ -0.38
PTPRA-201ENST00000216877 IGHV2OR16-5A0A0B4J2B6 119 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 A0A1W2PN81 502 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 GNG7O60262 68 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 SERPINE2P07093 398 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 S100GP29377 79 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 HYAL1Q12794 435 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 OR4D5Q8NGN0 318 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 ADIPOR1Q96A54 375 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 COX14Q96I36 57 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 MRPL18Q9H0U6 180 aaKnown RBP12.64□□□□□ -0.39
PTPRA-201ENST00000216877 HSPB7Q9UBY9 170 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 PILRAQ9UKJ1 303 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 RIF1Q5UIP0 2472 aaKnown RBP12.64□□□□□ -0.39
PTPRA-201ENST00000216877 EDDM13A0A1B0GTR0 161 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 A0A1W2PQU0 124 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 SIRPB1O00241 398 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 RBMXL2O75526 392 aaKnown RBP12.64□□□□□ -0.39
PTPRA-201ENST00000216877 CD46P15529 392 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 CLRN1P58418 232 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 MRPL52Q86TS9 123 aaKnown RBP12.64□□□□□ -0.39
PTPRA-201ENST00000216877 MMABQ96EY8 250 aaPredicted RBP12.64□□□□□ -0.39
PTPRA-201ENST00000216877 P2RX4Q99571 388 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 PYGO2Q9BRQ0 406 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 TRAV39A0A0B4J263 110 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 SNURFLB1AK76 121 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 J3QW42 95 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 LINC01565O15544 149 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 HNRNPA1L2Q32P51 320 aaKnown RBP12.64□□□□□ -0.39
PTPRA-201ENST00000216877 NIT1Q86X76 327 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 OR5D13Q8NGL4 314 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 RNF133Q8WVZ7 376 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 RPP25Q9BUL9 199 aaKnown RBP12.64□□□□□ -0.39
PTPRA-201ENST00000216877 LYRM4Q9HD34 91 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 SLC45A2Q9UMX9 530 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 PIGLQ9Y2B2 252 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 ANAPC1Q9H1A4 1944 aa12.64□□□□□ -0.39
PTPRA-201ENST00000216877 VSTM2BA6NLU5 285 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 H3BMH7 237 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 NDUFB4O95168 129 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 IGLC2P0DOY2 106 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 IGLC3P0DOY3 106 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 CD99P14209 185 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 SRP14P37108 136 aaKnown RBP12.63□□□□□ -0.39
PTPRA-201ENST00000216877 LYPD6Q86Y78 171 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 SGCZQ96LD1 299 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 C1orf147Q96MC9 270 aaPredicted RBP12.63□□□□□ -0.39
PTPRA-201ENST00000216877 NAT8BQ9UHF3 227 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 IGKV1-9A0A0C4DH69 117 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 ZNF253O75346 499 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 VAMP5O95183 116 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 EXT1Q16394 746 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 C1orf174Q8IYL3 243 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 VWCEQ96DN2 955 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 WNT16Q9UBV4 365 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 TDRD6O60522 2096 aaKnown RBP12.63□□□□□ -0.39
PTPRA-201ENST00000216877 H0Y8G0 127 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 LINC01551Q86U37 167 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 TSTD1Q8NFU3 115 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 CTHRC1Q96CG8 243 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 NEIL1Q96FI4 390 aaPredicted RBP12.63□□□□□ -0.39
PTPRA-201ENST00000216877 NRN1Q9NPD7 142 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 PSENENQ9NZ42 101 aa12.63□□□□□ -0.39
PTPRA-201ENST00000216877 SHISA8B8ZZ34 492 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 C11orf94C9JXX5 98 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 SLC17A3O00476 420 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 WDR1O75083 606 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 SAP30O75446 220 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 HNRNPA1P09651 372 aaKnown RBP eCLIP12.62□□□□□ -0.39
PTPRA-201ENST00000216877 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.62□□□□□ -0.39
PTPRA-201ENST00000216877 OR2D3Q8NGH3 330 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 OR10G4Q8NGN3 311 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 FGF22Q9HCT0 170 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 RNF115Q9Y4L5 304 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 MYO15AQ9UKN7 3530 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 TPRP12270 2363 aaKnown RBP12.62□□□□□ -0.39
PTPRA-201ENST00000216877 DPRXA6NFQ7 191 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 TOX4O94842 621 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 TSPOP30536 169 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 OTX1P32242 354 aaPredicted RBP12.62□□□□□ -0.39
PTPRA-201ENST00000216877 SOHLH2Q9NX45 425 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 PXMP4Q9Y6I8 212 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 DMDP11532 3685 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 C5orf63A6NC05 138 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 OR2T8A6NH00 312 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 CD300LBA8K4G0 201 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 PLPP3O14495 311 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 HCRTR1O43613 425 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 ZNF133P52736 654 aaPredicted RBP12.62□□□□□ -0.39
PTPRA-201ENST00000216877 PPP1CAP62136 330 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 HLA-DRB5Q30154 266 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 PARM1Q6UWI2 310 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 ZNF519Q8TB69 540 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 ARL2-SNX15V9GYD0 113 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 TTC28Q96AY4 2481 aa12.62□□□□□ -0.39
PTPRA-201ENST00000216877 IGHV2-70DA0A0C4DH43 119 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms