RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 OR2T10Q8NGZ9 312 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM45BQ96B21 275 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 EAF1Q96JC9 268 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-217ENST00000637988 OR2H1Q9GZK4 316 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 PRSS50Q9UI38 385 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 ACACAQ13085 2346 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 IGHV1-45A0A0A0MS14 117 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 M0QZK8 103 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 NKX2-2O95096 273 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 FGF5P12034 268 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 PRDX2P32119 198 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 CMC4P56277 68 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-217ENST00000637988 RHOUQ7L0Q8 258 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 MRPL24Q96A35 216 aaKnown RBP5.38□□□□□ -1.55
SCN1A-217ENST00000637988 ZC3H12DA2A288 527 aaKnown RBP5.38□□□□□ -1.55
SCN1A-217ENST00000637988 WNT1P04628 370 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 PMELP40967 661 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 STHQ8IWL8 128 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 FAM26EQ8N5C1 309 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 COMMD1Q8N668 190 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 C17orf47Q8NEP4 570 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 NUDCD2Q8WVJ2 157 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 GSX1Q9H4S2 264 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM38BQ9NVV0 291 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 MRPL22Q9NWU5 206 aaKnown RBP5.38□□□□□ -1.55
SCN1A-217ENST00000637988 NAT8BQ9UHF3 227 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 WIPI2Q9Y4P8 454 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 DOCK10Q96BY6 2186 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 ISLRO14498 428 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 CTLA4P16410 223 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 UCP2P55851 309 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 LILRA6Q6PI73 481 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 GEMIN7Q9H840 131 aaKnown RBP5.38□□□□□ -1.55
SCN1A-217ENST00000637988 CHST2Q9Y4C5 530 aa5.38□□□□□ -1.55
SCN1A-217ENST00000637988 ADAMTS7Q9UKP4 1686 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 FRMPD3Q5JV73 1810 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 TRAV1-2A0A0B4J238 106 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 E9PQ18 207 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 H3BP45 60 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 COX6CP09669 75 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 CCL3P10147 92 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM183BQ1AE95 376 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 PRSS45Q7RTY3 260 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 C8orf46Q8TAG6 207 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 GREB1Q4ZG55 1949 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF407Q9C0G0 2248 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 DENND4AQ7Z401 1863 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 KIAA2026Q5HYC2 2103 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 CELA2BP08218 269 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF883P0CG24 379 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 SSX1Q16384 188 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 GCSAMQ8N6F7 178 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 PTX4Q96A99 478 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 TMEM30BQ3MIR4 351 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 LIAT1Q6ZQX7 453 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 RELL2Q8NC24 303 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-217ENST00000637988 ZBTB44Q8NCP5 570 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 OR52I2Q8NH67 350 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 CLEC7AQ9BXN2 247 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 C7orf69Q9H7B7 122 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 RALYQ9UKM9 306 aaKnown RBP5.37□□□□□ -1.55
SCN1A-217ENST00000637988 A0A0B4J2E0 115 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 A0A1B0GX12 115 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 H7C1H1 209 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 J3QR06 171 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 CCSO14618 274 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 RNF224P0DH78 156 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 CBR1P16152 277 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 CD96P40200 585 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 CDK5R1Q15078 307 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 C10orf90Q96M02 699 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 ANK1P16157 1881 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 GPX1P07203 203 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 MYOD1P15172 320 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 NMUP48645 174 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 HMGA2P52926 109 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 DNM1P46Q6ZS02 220 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 RSG1Q9BU20 258 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 GABARAPL3Q9BY60 117 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 OR2J1Q9GZK6 312 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 IL21Q9HBE4 155 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 NCKAP5O14513 1909 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 MPV17LQ2QL34 196 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 NSUN5P1Q3KNT7 163 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 PET117Q6UWS5 81 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 OLIG3Q7RTU3 272 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 HAPLN4Q86UW8 402 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 MRPL30Q8TCC3 161 aaKnown RBP5.37□□□□□ -1.55
SCN1A-217ENST00000637988 RXFP4Q8TDU9 374 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 PRSS22Q9GZN4 317 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 STARD10Q9Y365 291 aa5.37□□□□□ -1.55
SCN1A-217ENST00000637988 TRBV5-4A0A0C4DH59 114 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ZNF737O75373 536 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 PRNTQ86SH4 94 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 MARS2Q96GW9 593 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 ARHGAP5-AS1Q96IT6 56 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SLC6A13Q9NSD5 602 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 CNOT1A5YKK6 2376 aaKnown RBP5.36□□□□□ -1.55
SCN1A-217ENST00000637988 SBF2Q86WG5 1849 aa5.36□□□□□ -1.55
SCN1A-217ENST00000637988 IGKV3OR2-268A0A0C4DH90 116 aa5.36□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms