RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 LY6LH3BQJ8 138 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 SPINT2O43291 252 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 ORC5O43913 435 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 OR2F2O95006 317 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A15PP0C7V4 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A13PP0C7W8 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A14PP0C7W9 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FAM90A24PP0C7X0 464 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 UBBP0CG47 229 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 FUT3P21217 361 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 MAP2K4P45985 399 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 HNF4GQ14541 408 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 TRAM1Q15629 374 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 TMEM95Q3KNT9 176 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 ABCA11PQ4W5N1 156 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 C6orf183Q5T699 404 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 CENPVQ7Z7K6 275 aaPredicted RBP9.3□□□□□ -0.92
CLN3-257ENST00000637110 MOB3BQ86TA1 216 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 DRAM1Q8N682 238 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 OR56B4Q8NH76 319 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 PHYHIPQ92561 330 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 RBM14Q96PK6 669 aaKnown RBP9.3□□□□□ -0.92
CLN3-257ENST00000637110 PLGRKTQ9HBL7 147 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 SERTAD4Q9NUC0 356 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 NECAP2Q9NVZ3 263 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 GNG12Q9UBI6 72 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 BLOC1S6Q9UL45 172 aa9.3□□□□□ -0.92
CLN3-257ENST00000637110 SH2D7A6NKC9 451 aaPredicted RBP9.29□□□□□ -0.92
CLN3-257ENST00000637110 C15orf65H3BRN8 121 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 CCRL2O00421 344 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 GAPDHP04406 335 aaKnown RBP9.29□□□□□ -0.92
CLN3-257ENST00000637110 LPLP06858 475 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 SNRNP70P08621 437 aaKnown RBP9.29□□□□□ -0.92
CLN3-257ENST00000637110 CD28P10747 220 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 TMEM11P17152 192 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 CRHBPP24387 322 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 IL3RAP26951 378 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 HTR2CP28335 458 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 REG1BP48304 166 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 RAB7AP51149 207 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 RPS25P62851 125 aaKnown RBP9.29□□□□□ -0.92
CLN3-257ENST00000637110 DIAPH2-AS1Q14236 149 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 OR10K2Q6IF99 312 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 TRAT1Q6PIZ9 186 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 Q6ZS46 218 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 PRSS48Q7RTY5 328 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 LRRTM1Q86UE6 522 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 Q8N2B8 174 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 OR10V1Q8NGI7 309 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 Q96M66 194 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 TMEM59Q9BXS4 323 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 LINC00574Q9H8X3 128 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 CHMP1AQ9HD42 196 aaPredicted RBP9.29□□□□□ -0.92
CLN3-257ENST00000637110 GFOD1Q9NXC2 390 aa9.29□□□□□ -0.92
CLN3-257ENST00000637110 RCC2Q9P258 522 aaKnown RBP9.29□□□□□ -0.92
CLN3-257ENST00000637110 NOTCH3Q9UM47 2321 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 C12orf77C9JDV5 145 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 M0QZK8 103 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 HSD17B6O14756 317 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 PDCD6O75340 191 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 CA11O75493 328 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 ARL6IP5O75915 188 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 ATP6V1G2O95670 118 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 IGKV1D-33P01593 117 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 IGKV1-33P01594 117 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 HBZP02008 142 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 UCHL1P09936 223 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 PSMA1P25786 263 aaKnown RBP9.28□□□□□ -0.92
CLN3-257ENST00000637110 GP2P55259 537 aaKnown RBP9.28□□□□□ -0.92
CLN3-257ENST00000637110 MLLT11Q13015 90 aaPredicted RBP9.28□□□□□ -0.92
CLN3-257ENST00000637110 TPBGQ13641 420 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 P2RY14Q15391 338 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 C1orf100Q5SVJ3 147 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 FAM53AQ6NSI3 398 aaPredicted RBP9.28□□□□□ -0.92
CLN3-257ENST00000637110 LYPD6Q86Y78 171 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 OR8H3Q8N146 312 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 OR5AU1Q8NGC0 362 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 OR52M1Q8NGK5 317 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 OR1L1Q8NH94 360 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 KCNG3Q8TAE7 436 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 SETD6Q8TBK2 473 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 CFHR4Q92496 578 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 WWC2-AS2Q96NR7 200 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 MGLLQ99685 303 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 TAF9BQ9HBM6 251 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 ISYNA1Q9NPH2 558 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 RAB26Q9ULW5 256 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 MOB4Q9Y3A3 225 aa9.28□□□□□ -0.92
CLN3-257ENST00000637110 AK6Q9Y3D8 172 aaKnown RBP9.28□□□□□ -0.92
CLN3-257ENST00000637110 IGHV3-72A0A0B4J1Y9 119 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 A0A1W2PPI3 338 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 A0A1W2PRX2 142 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 NCBP2LA6PVI3 153 aaKnown RBP9.27□□□□□ -0.93
CLN3-257ENST00000637110 GLAP06280 429 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 CPEP16870 476 aa9.27□□□□□ -0.93
CLN3-257ENST00000637110 RCC1P18754 421 aaPredicted RBP9.27□□□□□ -0.93
CLN3-257ENST00000637110 CALRP27797 417 aaKnown RBP9.27□□□□□ -0.93
CLN3-257ENST00000637110 BLVRBP30043 206 aaPredicted RBP9.27□□□□□ -0.93
CLN3-257ENST00000637110 RPS27AP62979 156 aaKnown RBP9.27□□□□□ -0.93
CLN3-257ENST00000637110 EMX1Q04741 257 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms