RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 LIN7CQ9NUP9 197 aaKnown RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF319Q9P2F9 582 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ABCA2Q9BZC7 2435 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SPAG17Q6Q759 2223 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CACNA1CQ13936 2221 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 hCG_1809904A0A1W2PP81 198 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 A0A1W2PR64 198 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 A0A1W2PRV1 198 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 FAM24AA6NFZ4 105 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF732B4DXR9 585 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 H0Y980 276 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 H3BQ15 152 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 K7N7A8 449 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 NDUFS8O00217 210 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ADAM20O43506 726 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 LY86O95711 162 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 MBP02144 154 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 FGF5P12034 268 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SLC25A6P12236 298 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 MDH2P40926 338 aaKnown RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CD200P41217 278 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 AKR1C3P42330 323 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 NDUFA6P56556 154 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 HLA-DRB3P79483 266 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF506Q5JVG8 444 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 Q6ZS49 121 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SLC16A13Q7RTY0 426 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 TBC1D26Q86UD7 250 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 H1FOOQ8IZA3 346 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF611Q8N823 705 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR5D13Q8NGL4 314 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR10G4Q8NGN3 311 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR5C1Q8NGR4 320 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR10J5Q8NHC4 309 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM56Q96MV1 263 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF385AQ96PM9 386 aaKnown RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 HDHD3Q9BSH5 251 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SOX7Q9BT81 388 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 PRDM14Q9GZV8 571 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 LOXL2Q9Y4K0 774 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CHCHD2Q9Y6H1 151 aaPredicted RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SLCO1B1Q9Y6L6 691 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM56-RWDD3S4R434 201 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SPTA1P02549 2419 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 BDP1A6H8Y1 2624 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 WDR87Q6ZQQ6 2873 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 LOC102723996A0A087X1L8 192 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 IGHV3-15A0A0B4J1V0 119 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 IGHV5-10-1A0A0J9YXX1 117 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 NKX2-6A6NCS4 301 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CLDN34H7C241 214 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 DEGS1O15121 323 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SYNGR3O43761 229 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 B4GALT1P15291 398 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CRYGSP22914 178 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 GDF1P27539 372 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 BMI1P35226 326 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 APLNRP35414 380 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 RPL19P84098 196 aaKnown RBP3.43□□□□□ -1.86
SCN1A-214ENST00000637038 HAGHQ16775 308 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 CEACAM16Q2WEN9 425 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 DNLZQ5SXM8 178 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 ZNF787Q6DD87 383 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 SLC25A45Q8N413 288 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM252Q8N6L7 170 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR4D5Q8NGN0 318 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 OR2AE1Q8NHA4 323 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 AKR7LQ8NHP1 331 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 NABP1Q96AH0 204 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 PGPEP1Q9NXJ5 209 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 KCNIP1Q9NZI2 227 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 MIOXQ9UGB7 285 aa3.43□□□□□ -1.86
SCN1A-214ENST00000637038 A0A1W2PPE2 198 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 SMCO3A2RU48 225 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 OR5B21A6NL26 309 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 AHRRA9YTQ3 701 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 CXCL13O43927 109 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 IGHV2-70P01814 119 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 EPHA1P21709 976 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 ACKR3P25106 362 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 LMO1P25800 156 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 GRNP28799 593 aaKnown RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 GPX4P36969 197 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 DYNLT3P51808 116 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 MLF1P58340 268 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 FGF12P61328 243 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 TMEM42Q69YG0 159 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 GUSBP11Q6P575 273 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 DTX1Q86Y01 620 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 Q8IYB0 196 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 OR2Y1Q8NGV0 311 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 MSI2Q96DH6 328 aaKnown RBP3.42□□□□□ -1.86
SCN1A-214ENST00000637038 P2RX4Q99571 388 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 KCNS2Q9ULS6 477 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 KIF26BQ2KJY2 2108 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 TRBV23-1A0A0A0MS06 115 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 IGHV1-45A0A0A0MS14 117 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 A0A0J9YW62 118 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 hCG_38984A0A1B0GV85 526 aa3.42□□□□□ -1.86
SCN1A-214ENST00000637038 HSD17B6O14756 317 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms