RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 CHD3Q12873 2000 aaKnown RBP13.2□□□□□ -0.3
CLN3-251ENST00000636853 PSPNO60542 156 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 DEDDO75618 318 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 MBPP02686 304 aaPredicted RBP13.2□□□□□ -0.3
CLN3-251ENST00000636853 HKR1P10072 659 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 BMP5P22003 454 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 CEACAM8P31997 349 aaPredicted RBP13.2□□□□□ -0.3
CLN3-251ENST00000636853 C10orf91Q5T1B1 145 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 WDR82Q6UXN9 313 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 OR52M1Q8NGK5 317 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 TREM2Q9NZC2 230 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 DNAJB11Q9UBS4 358 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 UBE2J1Q9Y385 318 aaPredicted RBP13.2□□□□□ -0.3
CLN3-251ENST00000636853 FAM27E3Q08E93 113 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 SNTB1Q13884 538 aaKnown RBP13.2□□□□□ -0.3
CLN3-251ENST00000636853 SMCO1Q147U7 214 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 H1FOOQ8IZA3 346 aaPredicted RBP13.2□□□□□ -0.3
CLN3-251ENST00000636853 Q8NA96 180 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 USB1Q9BQ65 265 aaKnown RBP13.2□□□□□ -0.3
CLN3-251ENST00000636853 CABLES2Q9BTV7 478 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 SFXN3Q9BWM7 321 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 TMEM222Q9H0R3 208 aa13.2□□□□□ -0.3
CLN3-251ENST00000636853 ERRFI1Q9UJM3 462 aaPredicted RBP13.2□□□□□ -0.3
CLN3-251ENST00000636853 TMEM218A2RU14 115 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 PCP4L1A6NKN8 68 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 ACAA1P09110 424 aaPredicted RBP13.19□□□□□ -0.3
CLN3-251ENST00000636853 RND3P61587 244 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 TBR1Q16650 682 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 DHRS7BQ6IAN0 325 aaPredicted RBP13.19□□□□□ -0.3
CLN3-251ENST00000636853 FIP1L1Q6UN15 594 aaKnown RBP13.19□□□□□ -0.3
CLN3-251ENST00000636853 OR2Z1Q8NG97 314 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 MUCL1Q96DR8 90 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 BIN3Q9NQY0 253 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 TAAR3PQ9P1P4 343 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 MLXQ9UH92 298 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 OR2W1Q9Y3N9 320 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 CUL9Q8IWT3 2517 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 K7EPK0 472 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 TPT1P13693 172 aaKnown RBP13.19□□□□□ -0.3
CLN3-251ENST00000636853 TDGF1P3P51864 188 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 VHLLQ6RSH7 139 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 ACP7Q6ZNF0 438 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 C22orf34Q6ZV56 151 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 DOLPP1Q86YN1 238 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 FAM71E2Q8N5Q1 922 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 STOML3Q8TAV4 291 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 TLNRD1Q9H1K6 362 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 OR2S2Q9NQN1 319 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 COA4Q9NYJ1 87 aa13.19□□□□□ -0.3
CLN3-251ENST00000636853 CARHSP1Q9Y2V2 147 aaKnown RBP13.19□□□□□ -0.3
CLN3-251ENST00000636853 ZNF695Q8IW36 515 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 BAP18Q8IXM2 172 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 SH3BGRL2Q9UJC5 107 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 TMED3Q9Y3Q3 217 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 PIEZO2Q9H5I5 2752 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 NKX2-6A6NCS4 301 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 A8MXE2 369 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 FGF16O43320 207 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 PGLYRP1O75594 196 aaPredicted RBP13.18□□□□□ -0.3
CLN3-251ENST00000636853 PTBP3O95758 552 aaKnown RBP13.18□□□□□ -0.3
CLN3-251ENST00000636853 CRYAAP02489 173 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 IFNA4P05014 189 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 RPL12P30050 165 aaKnown RBP13.18□□□□□ -0.3
CLN3-251ENST00000636853 RAB13P51153 203 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 MOB1BQ7L9L4 216 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 CMTM1Q8IZ96 169 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 SELENOHQ8IZQ5 122 aaKnown RBP13.18□□□□□ -0.3
CLN3-251ENST00000636853 TSNAXQ99598 290 aaKnown RBP13.18□□□□□ -0.3
CLN3-251ENST00000636853 TAF9BQ9HBM6 251 aa13.18□□□□□ -0.3
CLN3-251ENST00000636853 C1QTNF9BB2RNN3 333 aa13.17□□□□□ -0.3
CLN3-251ENST00000636853 F8W036 122 aa13.17□□□□□ -0.3
CLN3-251ENST00000636853 HSPA12AO43301 675 aa13.17□□□□□ -0.3
CLN3-251ENST00000636853 CLEC9AQ6UXN8 241 aa13.17□□□□□ -0.3
CLN3-251ENST00000636853 C1orf174Q8IYL3 243 aa13.17□□□□□ -0.3
CLN3-251ENST00000636853 NARS2Q96I59 477 aaKnown RBP13.17□□□□□ -0.3
CLN3-251ENST00000636853 TMEM56Q96MV1 263 aa13.17□□□□□ -0.3
CLN3-251ENST00000636853 MBNL3Q9NUK0 354 aaKnown RBP13.17□□□□□ -0.3
CLN3-251ENST00000636853 METRNQ9UJH8 293 aa13.17□□□□□ -0.3
CLN3-251ENST00000636853 TMEM56-RWDD3S4R434 201 aa13.17□□□□□ -0.3
CLN3-251ENST00000636853 A0A0G2JNJ9 132 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 K7ENP7 123 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 PRRG2O14669 202 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 HEXAP06865 529 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 LMO1P25800 156 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 AESQ08117 197 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 TESK1Q15569 626 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 SPAG16Q8N0X2 631 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 DMBX1Q8NFW5 382 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 OR10V1Q8NGI7 309 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 TMED6Q8WW62 240 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 C12orf57Q99622 126 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 PARP12Q9H0J9 701 aaKnown RBP13.16□□□□□ -0.3
CLN3-251ENST00000636853 Q9UFV3 132 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 WIPI2Q9Y4P8 454 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 SRPXP78539 464 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 PRR30Q53SZ7 412 aaPredicted RBP13.16□□□□□ -0.3
CLN3-251ENST00000636853 SPRNQ5BIV9 151 aa13.16□□□□□ -0.3
CLN3-251ENST00000636853 RPL7L1Q6DKI1 246 aaKnown RBP13.16□□□□□ -0.3
CLN3-251ENST00000636853 PUSL1Q8N0Z8 303 aaKnown RBP13.16□□□□□ -0.3
CLN3-251ENST00000636853 LRRC29Q8WV35 223 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms