RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PCDHB10Q9UN67 800 aa16.67■□□□□ 0.26
CLN3-250ENST00000636839 CELSR2Q9HCU4 2923 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 SPG11Q96JI7 2443 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 IGHV3-43A0A0B4J1X8 118 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 HMX3A6NHT5 357 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 OVOL3O00110 214 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 PPIHO43447 177 aaKnown RBP16.66■□□□□ 0.26
CLN3-250ENST00000636839 TUSC2O75896 110 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 IL5P05113 134 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 IGHV3-43DP0DP04 118 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 COX6B1P14854 86 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 ERVFRD-1P60508 538 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 METTL11BQ5VVY1 283 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 H1FOOQ8IZA3 346 aaPredicted RBP16.66■□□□□ 0.26
CLN3-250ENST00000636839 FAM210AQ96ND0 272 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 GPHA2Q96T91 129 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 PRR13Q9NZ81 148 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 CSMD2Q7Z408 3487 aa16.66■□□□□ 0.26
CLN3-250ENST00000636839 DVL1O14640 695 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 F12P00748 615 aaPredicted RBP16.65■□□□□ 0.26
CLN3-250ENST00000636839 ZNF728P0DKX0 622 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 CXCL3P19876 107 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 RRAS2P62070 204 aaPredicted RBP16.65■□□□□ 0.26
CLN3-250ENST00000636839 DHRS2Q13268 280 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 ZNF626Q68DY1 528 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 IGFBPL1Q8WX77 278 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 MED30Q96HR3 178 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 FAM234AQ9H0X4 552 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 ALX4Q9H161 411 aaPredicted RBP16.65■□□□□ 0.26
CLN3-250ENST00000636839 NARFLQ9H6Q4 476 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 C19orf12Q9NSK7 152 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 FBXO9Q9UK97 447 aaPredicted RBP16.65■□□□□ 0.26
CLN3-250ENST00000636839 POM121CA8CG34 1229 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 HSPA12AO43301 675 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 SSNA1O43805 119 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 PRAF2O60831 178 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 HEXAP06865 529 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 CTXN2P0C2S0 81 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 CEACAM6P40199 344 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 C2orf68Q2NKX9 166 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 PHLDA2Q53GA4 152 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 OR11H7Q8NGC8 314 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 SECTM1Q8WVN6 248 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 LURAP1Q96LR2 239 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 MED28Q9H204 178 aa16.65■□□□□ 0.26
CLN3-250ENST00000636839 CENPEQ02224 2701 aa16.64■□□□□ 0.26
CLN3-250ENST00000636839 FAM172BPA6NC97 362 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 IGHV3-7P01780 117 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 ZBTB25P24278 435 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 IL2RGP31785 369 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 HERV-K104P61576 105 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 ZNF565Q8N9K5 539 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 UXS1Q8NBZ7 420 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 OR10V1Q8NGI7 309 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 GALMQ96C23 342 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 DNTTIP1Q9H147 329 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 RDH8Q9NYR8 311 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 MGAT4AQ9UM21 535 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 VPS13CQ709C8 3753 aa16.64■□□□□ 0.25
CLN3-250ENST00000636839 BOLA2-SMG1P6H3BVE0 249 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 HLA-AP01891 365 aaKnown RBP16.63■□□□□ 0.25
CLN3-250ENST00000636839 CGB3P0DN86 165 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 CGB7P0DN87 165 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 VAMP1P23763 118 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 ERP29P30040 261 aaKnown RBP16.63■□□□□ 0.25
CLN3-250ENST00000636839 GNRHRP30968 328 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 PPP1CCP36873 323 aaKnown RBP16.63■□□□□ 0.25
CLN3-250ENST00000636839 SUPT4H1P63272 117 aaKnown RBP16.63■□□□□ 0.25
CLN3-250ENST00000636839 CD83Q01151 205 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 C17orf58Q2M2W7 97 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 C6orf183Q5T699 404 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 LIN54Q6MZP7 749 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 C14orf79Q96F83 325 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 NDUFB3O43676 98 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 CCNKO75909 580 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 EFNA4P52798 201 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 MRPS11P82912 194 aaKnown RBP16.63■□□□□ 0.25
CLN3-250ENST00000636839 ZNF273Q14593 569 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 CR1LQ2VPA4 569 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 AKAP14Q86UN6 197 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 CASTOR1Q8WTX7 329 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 H1FXQ92522 213 aaKnown RBP16.63■□□□□ 0.25
CLN3-250ENST00000636839 ST6GAL2Q96JF0 529 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 RANGRFQ9HD47 186 aaPredicted RBP16.63■□□□□ 0.25
CLN3-250ENST00000636839 KAAG1Q9UBP8 84 aa16.63■□□□□ 0.25
CLN3-250ENST00000636839 DSCAML1Q8TD84 2053 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 C9orf170A2RU37 121 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 CREBL2O60519 120 aaPredicted RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 MMP23AO75900 390 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 DIRAS3O95661 229 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 RPS2P15880 293 aaKnown RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 SURF2Q15527 256 aaPredicted RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 SLC9A3R2Q15599 337 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 ZNF525Q8N782 197 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 ZNF431Q8TF32 576 aaPredicted RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 FYTTD1Q96QD9 318 aaKnown RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 CCL19Q99731 98 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 CHODLQ9H9P2 273 aa16.62■□□□□ 0.25
CLN3-250ENST00000636839 GPN1Q9HCN4 374 aaPredicted RBP16.62■□□□□ 0.25
CLN3-250ENST00000636839 OR2S2Q9NQN1 319 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms