RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 OR4F5Q8NH21 305 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 OTOSQ8NHW6 89 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 KCNG3Q8TAE7 436 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 MRPL30Q8TCC3 161 aaKnown RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 RTN4IP1Q8WWV3 396 aaPredicted RBP5.92□□□□□ -1.46
SCN1A-213ENST00000636759 POM121L2Q96KW2 1035 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 FOXN4Q96NZ1 517 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 OR4F4Q96R69 305 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 PLA2G3Q9NZ20 509 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 B9D1Q9UPM9 204 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 RHBDD3Q9Y3P4 386 aa5.92□□□□□ -1.46
SCN1A-213ENST00000636759 C17orf112F2Z3M2 114 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 TMEM250H0YL14 139 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 J3KRW8 73 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 K7EQM0 130 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 NGFRP08138 427 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 RPL24P83731 157 aaKnown RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 HTD2P86397 168 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 TLE1Q04724 770 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 PHYHD1Q5SRE7 291 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 SLC48A1Q6P1K1 146 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 TCF23Q7RTU1 214 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 BATF2Q8N1L9 274 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 SGMS2Q8NHU3 365 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 FAM131CQ96AQ9 280 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF479Q96JC4 524 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF681Q96N22 645 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 GPER1Q99527 375 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 CHRDL1Q9BU40 450 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 NAA60Q9H7X0 242 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 RPRMQ9NS64 109 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 CLEC1BQ9P126 229 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 RANBP2P49792 3224 aaKnown RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 CACNA1IQ9P0X4 2223 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 SOCS1O15524 211 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 GPX1P07203 203 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 CA3P07451 260 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 NTF3P20783 257 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 HIST1H1TP22492 207 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 RAC3P60763 192 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 GPM6BQ13491 265 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 CENPVQ7Z7K6 275 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 TMEM171Q8WVE6 324 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 DDIT4LQ96D03 193 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 AMELYQ99218 206 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 THAP10Q9P2Z0 257 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 FANCMQ8IYD8 2048 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 MDFIC2A0A1B0GVS7 189 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 GRXCR1A8MXD5 290 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 SIRPB1O00241 398 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 P2RY10O00398 339 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF728P0DKX0 622 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 FMODQ06828 376 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF154Q13106 437 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 MLF2Q15773 248 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 HLA-DRB5Q30154 266 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 OTPQ5XKR4 325 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF776Q68DI1 518 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 GLIPR1L1Q6UWM5 242 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 LIAT1Q6ZQX7 453 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 MARCH3Q86UD3 253 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 LRRC25Q8N386 305 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 ARHGEF39Q8N4T4 335 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 NUS1Q96E22 293 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 ARHGAP5-AS1Q96IT6 56 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 TSPAN32Q96QS1 320 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 RBM24Q9BX46 236 aaKnown RBP5.91□□□□□ -1.46
SCN1A-213ENST00000636759 BANF2Q9H503 90 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 LRIT1Q9P2V4 623 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 EMC9Q9Y3B6 208 aa5.91□□□□□ -1.46
SCN1A-213ENST00000636759 LRP5LA4QPB2 252 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 KIAA1324LA8MWY0 1029 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-213ENST00000636759 J3QR89 54 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 SLC33A1O00400 549 aaPredicted RBP5.9□□□□□ -1.46
SCN1A-213ENST00000636759 FCN1O00602 326 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 HS3ST1O14792 307 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 CLEC3AO75596 197 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 S1PR2O95136 353 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 CBLN1P23435 193 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 OPRM1P35372 400 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 FXYD4P59646 89 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF90Q03938 601 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 DMWDQ09019 674 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 PDGFRLQ15198 375 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 PHLDA2Q53GA4 152 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 C9orf135Q5VTT2 229 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 ADAMTSL4Q6UY14 1074 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 CHRDL2Q6WN34 429 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 DEFB125Q8N687 156 aa5.9□□□□□ -1.46
SCN1A-213ENST00000636759 MRPL18Q9H0U6 180 aaKnown RBP5.9□□□□□ -1.46
SCN1A-213ENST00000636759 ALPK2Q86TB3 2170 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 TRAV9-2A0A087WT02 112 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 PHF1O43189 567 aaPredicted RBP5.9□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF207O43670 478 aaKnown RBP5.9□□□□□ -1.47
SCN1A-213ENST00000636759 LDB3O75112 727 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 VENTXO95231 258 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 IGLC1P0CG04 106 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 PPIAL4GP0DN37 164 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 KITLGP21583 273 aa5.9□□□□□ -1.47
SCN1A-213ENST00000636759 PEBP1P30086 187 aaKnown RBP5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms