RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 BARHL1Q9BZE3 327 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 ETAA1Q9NY74 926 aa10.99□□□□□ -0.65
CLN3-249ENST00000636685 SAMHD1Q9Y3Z3 626 aaKnown RBP10.99□□□□□ -0.65
CLN3-249ENST00000636685 PKD1P98161 4303 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 SDCBPO00560 298 aaPredicted RBP10.98□□□□□ -0.65
CLN3-249ENST00000636685 CSN3P07498 182 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 CD7P09564 240 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 PRKACBP22694 351 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 TPPP2P59282 170 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 ACTBP60709 375 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 LSAMPQ13449 338 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 KLF5Q13887 457 aaPredicted RBP10.98□□□□□ -0.65
CLN3-249ENST00000636685 RCN1Q15293 331 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 C5orf64Q2M2E5 130 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 DEFB107AQ8IZN7 70 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 RDH10Q8IZV5 341 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 PP6455Q8WZ26 134 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 NR1H4Q96RI1 486 aaPredicted RBP10.98□□□□□ -0.65
CLN3-249ENST00000636685 FEVQ99581 238 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 ADI1Q9BV57 179 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 NEK6Q9HC98 313 aa10.98□□□□□ -0.65
CLN3-249ENST00000636685 TXNL1O43396 289 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 ZP3P21754 424 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 SYNJ2BPP57105 145 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 LIN54Q6MZP7 749 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 FAHD1Q6P587 224 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 SLC25A48Q6ZT89 311 aaKnown RBP10.97□□□□□ -0.65
CLN3-249ENST00000636685 SLC35F2Q8IXU6 374 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 C8orf31Q8N9H6 132 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 OPALINQ96PE5 141 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 CNN2Q99439 309 aaKnown RBP10.97□□□□□ -0.65
CLN3-249ENST00000636685 RANGRFQ9HD47 186 aaPredicted RBP10.97□□□□□ -0.65
CLN3-249ENST00000636685 BATF3Q9NR55 127 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 FAM118AQ9NWS6 357 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 GFOD1Q9NXC2 390 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 ADAM30Q9UKF2 790 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 ERGIC3Q9Y282 383 aa10.97□□□□□ -0.65
CLN3-249ENST00000636685 A0A1B0GVY2 172 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 LOC107986453A0A1B0GWG9 222 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 ANKRD34BA5PLL1 514 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 C15orf65H3BRN8 121 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 NBR2O15453 112 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 APOL3O95236 402 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 TFAP2AP05549 437 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 EGR2P11161 476 aaPredicted RBP10.96□□□□□ -0.65
CLN3-249ENST00000636685 CRIP2P52943 208 aaPredicted RBP10.96□□□□□ -0.65
CLN3-249ENST00000636685 CDK5Q00535 292 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 TMEM236Q5W0B7 351 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 CCDC54Q8NEL0 328 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 OR52M1Q8NGK5 317 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 CNIH3Q8TBE1 160 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 ARL11Q969Q4 196 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 KCTD12Q96CX2 325 aaKnown RBP10.96□□□□□ -0.65
CLN3-249ENST00000636685 C10orf35Q96D05 121 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 ZNF251Q9BRH9 671 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 CST11Q9H112 138 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 VCX3BQ9H321 246 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 REEP1Q9H902 201 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 S100A14Q9HCY8 104 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 NUBP2Q9Y5Y2 271 aa10.96□□□□□ -0.65
CLN3-249ENST00000636685 OR11H12B2RN74 326 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 HSD17B1P14061 328 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 ZNF134P52741 427 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 ZNF137PP52743 207 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 OR2T5Q6IEZ7 315 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 PYHIN1Q6K0P9 492 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 UTS2BQ765I0 119 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 SSX6Q7RTT6 188 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 TCTEX1D1Q8N7M0 179 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 OR2T29Q8NH02 315 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 ABHD5Q8WTS1 349 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 DNAJC9Q8WXX5 260 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 FGGYQ96C11 551 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 RHOFQ9HBH0 211 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 SLC2A8Q9NY64 477 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 CNOT2Q9NZN8 540 aaKnown RBP10.95□□□□□ -0.66
CLN3-249ENST00000636685 POMPQ9Y244 141 aa10.95□□□□□ -0.66
CLN3-249ENST00000636685 ZNF670-ZNF695F2Z2N8 137 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 TRGV3P03979 118 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 OCM2P0CE71 109 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 OCMP0CE72 109 aaPredicted RBP10.94□□□□□ -0.66
CLN3-249ENST00000636685 MECP2P51608 486 aaKnown RBP10.94□□□□□ -0.66
CLN3-249ENST00000636685 CX3CL1P78423 397 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 PAX5Q02548 391 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 ACTBL2Q562R1 376 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 CT45A1Q5HYN5 189 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 ZNF660Q6AZW8 331 aaPredicted RBP10.94□□□□□ -0.66
CLN3-249ENST00000636685 ZFP1Q6P2D0 407 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 UNQ5815/PRO19632Q6UWF5 114 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 LYG2Q86SG7 212 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 SAXO1Q8IYX7 474 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 PRSS35Q8N3Z0 413 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 ZNF439Q8NDP4 499 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 CT45A3Q8NHU0 189 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 GIPC3Q8TF64 312 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 SPSB1Q96BD6 273 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 FAM103A1Q9BTL3 118 aaKnown RBP10.94□□□□□ -0.66
CLN3-249ENST00000636685 TVP23BQ9NYZ1 205 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 PLA2G2EQ9NZK7 142 aa10.94□□□□□ -0.66
CLN3-249ENST00000636685 ZNF581Q9P0T4 197 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms