RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SLC22A25Q6T423 547 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 MUCL1Q96DR8 90 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 EXPH5Q8NEV8 1989 aa12.45□□□□□ -0.42
SHROOM1-208ENST00000617339 LOC102725191A0A1B0GVB3 256 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 SEC14L6B5MCN3 397 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 FKBP2P26885 142 aaKnown RBP12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 THBS4P35443 961 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 PMELP40967 661 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 PKIAP61925 76 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 C10orf128Q5T292 105 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 ADPRHL1Q8NDY3 354 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 OR10AD1Q8NGE0 317 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 OBP2BQ9NPH6 170 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 ZFYVE26Q68DK2 2539 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 OR5H1A6NKK0 313 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 AGFG2O95081 481 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 DLK1P80370 383 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 FAM3AP98173 230 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 LYPD6Q86Y78 171 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 OR11L1Q8NGX0 322 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 DDA1Q9BW61 102 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 DANCRP0C864 163 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 TRGC1P0CF51 173 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 OR5H8P0DN80 308 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 PCBD1P61457 104 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 ERVS71-1P61550 626 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 ABCA11PQ4W5N1 156 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 MALSU1Q96EH3 234 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 PACRGQ96M98 296 aaPredicted RBP12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 C1orf123Q9NWV4 160 aa12.44□□□□□ -0.42
SHROOM1-208ENST00000617339 SMCO3A2RU48 225 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 CA6P23280 308 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 LHX2P50458 406 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 GFRA1P56159 465 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 LTC4SQ16873 150 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 AADACL3Q5VUY0 350 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 LRP11Q86VZ4 500 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 HIST3H2BBQ8N257 126 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 SCRT1Q9BWW7 348 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 ZNF552Q9H707 407 aaPredicted RBP12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 DEDDO75618 318 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 TFF1P04155 84 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 CELA3BP08861 270 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 LYL1P12980 280 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 CFPP27918 469 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 FRZBQ92765 325 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 SCGB3A2Q96PL1 93 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 ZNF732B4DXR9 585 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 BTF3P20290 206 aaKnown RBP12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 HNF4GQ14541 408 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 ELOBQ15370 118 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 CLEC12BQ2HXU8 276 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 PEAR1Q5VY43 1037 aaPredicted RBP12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 PP6455Q8WZ26 134 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 GALNT14Q96FL9 552 aa12.43□□□□□ -0.42
SHROOM1-208ENST00000617339 MED12LQ86YW9 2145 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 ZNF883P0CG24 379 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 BMP5P22003 454 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 CLDN18P56856 261 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 ZNF429Q86V71 674 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 SGPP2Q8IWX5 399 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 PLPPR2Q96GM1 343 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 RBM14Q96PK6 669 aaKnown RBP12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 HSF4Q9ULV5 492 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 MBPP02686 304 aaPredicted RBP12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 PGA5P0DJD9 388 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 WT1P19544 449 aaPredicted RBP12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 CYB561D1Q8N8Q1 229 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 RALYQ9UKM9 306 aaKnown RBP12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 ZZEF1O43149 2961 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 RBMXL2O75526 392 aaKnown RBP12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 BCL3P20749 454 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 TUBG1P23258 451 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 MPZP25189 248 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 TLE1Q04724 770 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 BATFQ16520 125 aa12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 SF3B5Q9BWJ5 86 aaKnown RBP12.42□□□□□ -0.42
SHROOM1-208ENST00000617339 TRAV17A0A0B4J275 112 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 SYNGR1O43759 233 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 TBPP20226 339 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 SPCS3P61009 180 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 MRPL49Q13405 166 aaKnown RBP12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 OR2G3Q8NGZ4 309 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 ADGRG7Q96K78 797 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 MAP1AP78559 2803 aaPredicted RBP12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 GSTP1P09211 210 aaKnown RBP12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 IL2RGP31785 369 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 CNN3Q15417 329 aaKnown RBP12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 KCNMB1Q16558 191 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 LYZL2Q7Z4W2 148 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 OSR2Q8N2R0 312 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 RBFOX3A6NFN3 312 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 ANKRD30BLA7E2S9 258 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 ZNF724A8MTY0 619 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 GAPDHP04406 335 aaKnown RBP12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 CST2P09228 141 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 RPS2P15880 293 aaKnown RBP12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 PCP4P48539 62 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 PRDX4Q13162 271 aa12.41□□□□□ -0.42
SHROOM1-208ENST00000617339 CISD2Q8N5K1 135 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms