RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SAA4P35542 130 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 SOX6P35712 828 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 TMEM30BQ3MIR4 351 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 ZNF260Q3ZCT1 412 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 MZT2AQ6P582 158 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 ABHD12Q8N2K0 398 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 OR52M1Q8NGK5 317 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 DYNC2LI1Q8TCX1 351 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 S100A16Q96FQ6 103 aaKnown RBP15.74■□□□□ 0.11
UPF1-209ENST00000600310 ZNF48Q96MX3 618 aaPredicted RBP15.74■□□□□ 0.11
UPF1-209ENST00000600310 PRDM13Q9H4Q3 707 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 Q9N2K0 584 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 DIABLOQ9NR28 239 aa15.74■□□□□ 0.11
UPF1-209ENST00000600310 A0A0U1RQK1 487 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 MEIOCA2RUB1 952 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 CCDC160A6NGH7 325 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 ARG1P05089 322 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 MRPS15P82914 257 aaKnown RBP15.73■□□□□ 0.11
UPF1-209ENST00000600310 ARFRP1Q13795 201 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 HMGN3Q15651 99 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 LTC4SQ16873 150 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 DEFB112Q30KQ8 113 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 UTF1Q5T230 341 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 OR1L1Q8NH94 360 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 UBALD1Q8TB05 177 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 SETD6Q8TBK2 473 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 ZNF418Q8TF45 676 aaPredicted RBP15.73■□□□□ 0.11
UPF1-209ENST00000600310 ZNF286AQ9HBT8 521 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 CCDC59Q9P031 241 aaKnown RBP15.73■□□□□ 0.11
UPF1-209ENST00000600310 RSL24D1Q9UHA3 163 aaKnown RBP15.73■□□□□ 0.11
UPF1-209ENST00000600310 MGAT4AQ9UM21 535 aa15.73■□□□□ 0.11
UPF1-209ENST00000600310 DNHD1Q96M86 4753 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 TRAV18A0A075B6X5 111 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 A0A0A6YYJ9 748 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 FAM172BPA6NC97 362 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 ZNF701M0R085 212 aaPredicted RBP15.72■□□□□ 0.11
UPF1-209ENST00000600310 SDCBPO00560 298 aaPredicted RBP15.72■□□□□ 0.11
UPF1-209ENST00000600310 LGALS4P56470 323 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 LOXL3P58215 753 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 PNLIPRP3Q17RR3 467 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 HACD4Q5VWC8 232 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 PRIMA1Q86XR5 153 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 SIGLECL1Q8N7X8 197 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 ZNF596Q8TC21 504 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 GFOD1Q9NXC2 390 aa15.72■□□□□ 0.11
UPF1-209ENST00000600310 ELF5Q9UKW6 265 aaPredicted RBP15.72■□□□□ 0.11
UPF1-209ENST00000600310 TBL2Q9Y4P3 447 aaKnown RBP15.72■□□□□ 0.11
UPF1-209ENST00000600310 MDFIC2A0A1B0GVS7 189 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 XRCC3O43542 346 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 APOA1P02647 267 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 EIF4EP06730 217 aaKnown RBP15.71■□□□□ 0.11
UPF1-209ENST00000600310 MELTFP08582 738 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 FCGR3AP08637 254 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 PITPNAQ00169 270 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 MINOS1Q5TGZ0 78 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 RBMS3Q6XE24 437 aaKnown RBP15.71■□□□□ 0.11
UPF1-209ENST00000600310 C5orf24Q7Z6I8 188 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 PRR18Q8N4B5 295 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 BEND2Q8NDZ0 799 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 OR9G1Q8NH87 305 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 GALMQ96C23 342 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 AJUBAQ96IF1 538 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 FAM96BQ9Y3D0 163 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 MINOS1-NBL1R4GNA1 71 aa15.71■□□□□ 0.11
UPF1-209ENST00000600310 SMIM31A0A1B0GVY4 71 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 TMEM235A6NFC5 223 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 TOR1AO14656 332 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 TCF21O43680 179 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 HPGDSO60760 199 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 IGLV1-47P01700 117 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 FBP1P09467 338 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 DTYMKP23919 212 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 TALDO1P37837 337 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 PRRX1P54821 245 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 HLA-DRB3P79483 266 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 HTD2P86397 168 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 Q3ZCU0 254 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 OR4P4Q8NGL7 312 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 C17orf50Q8WW18 174 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 ZDHHC16Q969W1 377 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 PSG11Q9UQ72 335 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 SVEP1Q4LDE5 3571 aa15.7■□□□□ 0.1
UPF1-209ENST00000600310 J3QR06 171 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 GNG2P59768 71 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 HILS1P60008 231 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 SRSF7Q16629 238 aaKnown RBP eCLIP15.69■□□□□ 0.1
UPF1-209ENST00000600310 HLA-DRB5Q30154 266 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 LDLRAD2Q5SZI1 272 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 FAM53AQ6NSI3 398 aaPredicted RBP15.69■□□□□ 0.1
UPF1-209ENST00000600310 Q6YL49 198 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 LHFPL4Q7Z7J7 247 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 LDLRAD3Q86YD5 345 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 IZUMO1Q8IYV9 350 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 LEAP2Q969E1 77 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 AUNIPQ9H7T9 357 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 OR2S2Q9NQN1 319 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 NDUFA13Q9P0J0 144 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 GNG12Q9UBI6 72 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 JPT1Q9UK76 154 aa15.69■□□□□ 0.1
UPF1-209ENST00000600310 IGHV3-43A0A0B4J1X8 118 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms