RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 RAB7AP51149 207 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 AQP4P55087 323 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 TAS2R43P59537 309 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 MADCAM1Q13477 382 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 SLC22A6Q4U2R8 563 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 C6orf141Q5SZD1 244 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 FAM53AQ6NSI3 398 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-212ENST00000597995 SLC16A12Q6ZSM3 486 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 SLC35E3Q7Z769 313 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 FOXRED2Q8IWF2 684 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 DRAM1Q8N682 238 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 MUL1Q969V5 352 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 BARHL1Q9BZE3 327 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 IDI2-AS1Q9NZ38 188 aa9.86□□□□□ -0.83
TRIM28-212ENST00000597995 LSM4Q9Y4Z0 139 aaKnown RBP9.86□□□□□ -0.83
TRIM28-212ENST00000597995 C15orf65H3BRN8 121 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 CCL24O00175 119 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 MYL12BO14950 172 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 CSTBP04080 98 aaKnown RBP9.85□□□□□ -0.83
TRIM28-212ENST00000597995 MAS1P04201 325 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 KCNJ3P48549 501 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 EBI3Q14213 229 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 DIAPH2-AS1Q14236 149 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 HES1Q14469 280 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 LTC4SQ16873 150 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 FAM27D1Q5T7N8 215 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 RNLSQ5VYX0 342 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 TEX38Q6PEX7 206 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 GLIPR1L1Q6UWM5 242 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 STPG2Q8N412 459 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 OR10A7Q8NGE5 316 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 PSG11Q9UQ72 335 aa9.85□□□□□ -0.83
TRIM28-212ENST00000597995 MRPS28Q9Y2Q9 187 aaKnown RBP9.85□□□□□ -0.83
TRIM28-212ENST00000597995 LSM2Q9Y333 95 aaKnown RBP9.85□□□□□ -0.83
TRIM28-212ENST00000597995 PTGES3LE9PB15 166 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 C3orf84H3BNL1 204 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 MT-ND4P03905 459 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 GTF2F2P13984 249 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 VHLP40337 213 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 HNF4GQ14541 408 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 IRF3Q14653 427 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 PNLIPRP3Q17RR3 467 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 MPV17LQ2QL34 196 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 LINC00596Q86U02 117 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 JAGN1Q8N5M9 183 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 TMEM104Q8NE00 496 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 UBALD1Q8TB05 177 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 RAX2Q96IS3 184 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 GON7Q9BXV9 100 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 RCC2Q9P258 522 aaKnown RBP9.84□□□□□ -0.83
TRIM28-212ENST00000597995 CKLFQ9UBR5 152 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 LINC00527Q9UJ94 153 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 ERGIC3Q9Y282 383 aa9.84□□□□□ -0.83
TRIM28-212ENST00000597995 A0A1W2PPE3 182 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 AP4M1O00189 453 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 ZNF780AO75290 641 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-212ENST00000597995 IGKV1D-33P01593 117 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 IGKV1-33P01594 117 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 CDX1P47902 265 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-212ENST00000597995 GNG10P50151 68 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 ZNF816Q0VGE8 651 aaPredicted RBP9.83□□□□□ -0.84
TRIM28-212ENST00000597995 KIR2DS1Q14954 304 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 ATAD3CQ5T2N8 411 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 C9orf66Q5T8R8 295 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 SIGIRRQ6IA17 410 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 ZNF497Q6ZNH5 498 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 LRRTM1Q86UE6 522 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 TGIF2LXQ8IUE1 241 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 CDH26Q8IXH8 852 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 RNF152Q8N8N0 203 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 OR5M8Q8NGP6 311 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 OR8U1Q8NH10 309 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 CCDC107Q8WV48 283 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 DUX3Q96PT4 197 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 S100A13Q99584 98 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 ABCG5Q9H222 651 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 VCXQ9H320 206 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 BANF2Q9H503 90 aa9.83□□□□□ -0.84
TRIM28-212ENST00000597995 LIN7CQ9NUP9 197 aaKnown RBP9.83□□□□□ -0.84
TRIM28-212ENST00000597995 TMEM30CPA0ZSE6 113 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 SC5DO75845 299 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 GAPDHP04406 335 aaKnown RBP9.82□□□□□ -0.84
TRIM28-212ENST00000597995 ELANEP08246 267 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 GPR176Q14439 515 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 SPHARQ15513 63 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 ACSM3Q53FZ2 586 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 CXorf66Q5JRM2 361 aaPredicted RBP9.82□□□□□ -0.84
TRIM28-212ENST00000597995 NKAPLQ5M9Q1 402 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 AWAT2Q6E213 333 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 C5orf24Q7Z6I8 188 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 IZUMO1Q8IYV9 350 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 GAPTQ8N292 157 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 OR10X1Q8NGY0 326 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 ARL11Q969Q4 196 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 MRPS24Q96EL2 167 aaKnown RBP9.82□□□□□ -0.84
TRIM28-212ENST00000597995 Q96M66 194 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 DUSP21Q9H596 190 aa9.82□□□□□ -0.84
TRIM28-212ENST00000597995 IGHV1-3A0A0C4DH29 117 aa9.81□□□□□ -0.84
TRIM28-212ENST00000597995 LINC01548A6NM66 108 aa9.81□□□□□ -0.84
TRIM28-212ENST00000597995 CCRL2O00421 344 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms