RNA–Protein interactions for RNA: ENST00000593919.5

VRK3-205, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best) BASIC

Gene VRK3, Length 1,979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-205ENST00000593919 CXorf58Q96LI9 332 aa11.09□□□□□ -0.63
VRK3-205ENST00000593919 MS4A5Q9H3V2 200 aa11.09□□□□□ -0.63
VRK3-205ENST00000593919 CHMP1AQ9HD42 196 aaPredicted RBP11.09□□□□□ -0.63
VRK3-205ENST00000593919 DECR2Q9NUI1 292 aa11.09□□□□□ -0.63
VRK3-205ENST00000593919 MBD2Q9UBB5 411 aa11.09□□□□□ -0.63
VRK3-205ENST00000593919 EDARQ9UNE0 448 aa11.09□□□□□ -0.63
VRK3-205ENST00000593919 A0A1W2PPR1 153 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 KANTRA0A1W2PQU2 76 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 RNF222A6NCQ9 220 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 I3L521 148 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 ZNF205O95201 554 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 TACC2O95359 2948 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 CRYZL1O95825 349 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 TFF1P04155 84 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 RRASP10301 218 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 PAN3Q58A45 887 aaKnown RBP11.08□□□□□ -0.64
VRK3-205ENST00000593919 ANGPTL6Q8NI99 470 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 EGLN1Q9GZT9 426 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 RASL12Q9NYN1 266 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 RNF7Q9UBF6 113 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 MPTX1A8MV57 137 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 KCNAB3O43448 404 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 OR2F2O95006 317 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 CYB5R3P00387 301 aaPredicted RBP11.08□□□□□ -0.64
VRK3-205ENST00000593919 RLN2P04090 185 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 OR5H8P0DN80 308 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 PSMB6P28072 239 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 UBA52P62987 128 aaKnown RBP11.08□□□□□ -0.64
VRK3-205ENST00000593919 OR2F1Q13607 317 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 SURF2Q15527 256 aaPredicted RBP11.08□□□□□ -0.64
VRK3-205ENST00000593919 AANATQ16613 207 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 FAM201AQ5SY85 155 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 OR5T2Q8NGG2 359 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 SUN5Q8TC36 379 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 METTL8Q9H825 291 aaKnown RBP11.08□□□□□ -0.64
VRK3-205ENST00000593919 RAB18Q9NP72 206 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 NECAP2Q9NVZ3 263 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 DCAF16Q9NXF7 216 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 DNAJB11Q9UBS4 358 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 GLS2Q9UI32 602 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 USF3Q68DE3 2245 aa11.08□□□□□ -0.64
VRK3-205ENST00000593919 IGHV3OR15-7A0A075B7D8 119 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 A0A0B4J2A0 478 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 BCL2L11O43521 198 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 PSPNO60542 156 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 NAPSAO96009 420 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 GLAP06280 429 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 NMBP08949 121 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 RPS2P15880 293 aaKnown RBP11.07□□□□□ -0.64
VRK3-205ENST00000593919 SRSF1Q07955 248 aaKnown RBP eCLIP11.07□□□□□ -0.64
VRK3-205ENST00000593919 RBM39Q14498 530 aaKnown RBP11.07□□□□□ -0.64
VRK3-205ENST00000593919 ZNF345Q14585 488 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 TM4SF20Q53R12 229 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 MEX3BQ6ZN04 569 aaKnown RBP11.07□□□□□ -0.64
VRK3-205ENST00000593919 ACOT7LQ6ZUV0 252 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 OR11L1Q8NGX0 322 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 ST8SIA2Q92186 375 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 DCUN1D4Q92564 292 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 TOMM40LQ969M1 308 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 NMES1Q9C002 83 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 LIME1Q9H400 295 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 SHPKQ9UHJ6 478 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 DSCAML1Q8TD84 2053 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 IGKV1D-17A0A075B6S4 117 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 HOXB5P09067 269 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 PSG2P11465 335 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 LMO1P25800 156 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 CD80P33681 288 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 ECI1P42126 302 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 LUMP51884 338 aaPredicted RBP11.07□□□□□ -0.64
VRK3-205ENST00000593919 CYCSP99999 105 aaKnown RBP11.07□□□□□ -0.64
VRK3-205ENST00000593919 FAM90A1Q86YD7 464 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 INO80EQ8NBZ0 244 aaPredicted RBP11.07□□□□□ -0.64
VRK3-205ENST00000593919 ZNF471Q9BX82 626 aaPredicted RBP11.07□□□□□ -0.64
VRK3-205ENST00000593919 METRNQ9UJH8 293 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 WIPI2Q9Y4P8 454 aa11.07□□□□□ -0.64
VRK3-205ENST00000593919 TEX13DA0A0J9YY54 714 aaPredicted RBP11.06□□□□□ -0.64
VRK3-205ENST00000593919 A6NNC1 897 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 IFNL4K9M1U5 179 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 IFNA2P01563 188 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 IRF2P14316 349 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 FXYD4P59646 89 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 C20orf204Q6ZNR8 217 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 FAM219AQ8IW50 185 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 SLC38A6Q8IZM9 456 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 CD177Q8N6Q3 437 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 PLPPR1Q8TBJ4 325 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 ZNF286AQ9HBT8 521 aa11.06□□□□□ -0.64
VRK3-205ENST00000593919 TEX46H3BTG2 121 aa11.05□□□□□ -0.64
VRK3-205ENST00000593919 CTSDP07339 412 aaPredicted RBP11.05□□□□□ -0.64
VRK3-205ENST00000593919 SOD3P08294 240 aa11.05□□□□□ -0.64
VRK3-205ENST00000593919 MDH2P40926 338 aaKnown RBP11.05□□□□□ -0.64
VRK3-205ENST00000593919 PPOXP50336 477 aa11.05□□□□□ -0.64
VRK3-205ENST00000593919 COL10A1Q03692 680 aa11.05□□□□□ -0.64
VRK3-205ENST00000593919 SHEQ5VZ18 495 aa11.05□□□□□ -0.64
VRK3-205ENST00000593919 CCDC28AQ8IWP9 274 aa11.05□□□□□ -0.64
VRK3-205ENST00000593919 SGPP2Q8IWX5 399 aa11.05□□□□□ -0.64
VRK3-205ENST00000593919 MRPL30Q8TCC3 161 aaKnown RBP11.05□□□□□ -0.64
VRK3-205ENST00000593919 OR10C1Q96KK4 312 aa11.05□□□□□ -0.64
VRK3-205ENST00000593919 CBLN4Q9NTU7 201 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms