RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 VSIG8P0DPA2 414 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 CD24P25063 80 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 RPS27AP62979 156 aaKnown RBP8.77□□□□□ -1.01
CLIP3-203ENST00000586457 TMEM91Q6ZNR0 172 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 C16orf82Q7Z2V1 217 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 OR2W3Q7Z3T1 314 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 MOB3BQ86TA1 216 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 UBALD1Q8TB05 177 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 PIFOQ8TCI5 191 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 GALMQ96C23 342 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 FAAP24Q9BTP7 215 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 RIMS4Q9H426 269 aaPredicted RBP8.77□□□□□ -1.01
CLIP3-203ENST00000586457 ZNF696Q9H7X3 374 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 LINC00574Q9H8X3 128 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 VCX3AQ9NNX9 186 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 OR2S2Q9NQN1 319 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 ZNF581Q9P0T4 197 aa8.77□□□□□ -1.01
CLIP3-203ENST00000586457 RCC2Q9P258 522 aaKnown RBP8.77□□□□□ -1.01
CLIP3-203ENST00000586457 IGHV3-43A0A0B4J1X8 118 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 A0A1W2PPE3 182 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 M0QZK8 103 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 CHST1O43916 411 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 HBZP02008 142 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 IGHV3-43DP0DP04 118 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 VDAC2P45880 294 aaPredicted RBP8.76□□□□□ -1.01
CLIP3-203ENST00000586457 GP2P55259 537 aaKnown RBP8.76□□□□□ -1.01
CLIP3-203ENST00000586457 PROK1P58294 105 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 SRSF4Q08170 494 aaKnown RBP8.76□□□□□ -1.01
CLIP3-203ENST00000586457 C2orf76Q3KRA6 126 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 KIAA2026Q5HYC2 2103 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 C9orf152Q5JTZ5 239 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 HES5Q5TA89 166 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 C6orf201Q7Z4U5 140 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 SPARTQ8N0X7 666 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 SLC25A33Q9BSK2 321 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 LIN7BQ9HAP6 207 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 TAF9BQ9HBM6 251 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 NDUFB11Q9NX14 153 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 GFOD1Q9NXC2 390 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 STEAP1Q9UHE8 339 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 SSR3Q9UNL2 185 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 SIGLEC9Q9Y336 463 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 DSCAML1Q8TD84 2053 aa8.76□□□□□ -1.01
CLIP3-203ENST00000586457 TRAV1-2A0A0B4J238 106 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 TRDV1A0A1B0GX56 115 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 METTL21EPA6NDL7 271 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 C12orf77C9JDV5 145 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 TMEM11P17152 192 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 JUNBP17275 347 aaPredicted RBP8.75□□□□□ -1.01
CLIP3-203ENST00000586457 RCC1P18754 421 aaPredicted RBP8.75□□□□□ -1.01
CLIP3-203ENST00000586457 RAB3BP20337 219 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 GALP22466 123 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 GADD45AP24522 165 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 VEGFCP49767 419 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 HNF4GQ14541 408 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 HERPUD1Q15011 391 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 LDLRAD2Q5SZI1 272 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 C22orf42Q6IC83 251 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 TREML4Q6UXN2 200 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 CENPVQ7Z7K6 275 aaPredicted RBP8.75□□□□□ -1.01
CLIP3-203ENST00000586457 ZNF554Q86TJ5 538 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 LYPD6Q86Y78 171 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 OR8H3Q8N146 312 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 DRAM1Q8N682 238 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 KLHDC1Q8N7A1 406 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 OR51D1Q8NGF3 324 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 OR56B1Q8NGI3 324 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 OR10V1Q8NGI7 309 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 IL1F10Q8WWZ1 152 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 FAM3DQ96BQ1 224 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 CITED1Q99966 193 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 OCSTAMPQ9BR26 566 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 RAB22AQ9UL26 194 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 MGAT4AQ9UM21 535 aa8.75□□□□□ -1.01
CLIP3-203ENST00000586457 NCBP2LA6PVI3 153 aaKnown RBP8.74□□□□□ -1.01
CLIP3-203ENST00000586457 TMEM14DPA8MWL7 114 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 LY6LH3BQJ8 138 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 C15orf65H3BRN8 121 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 HSD17B6O14756 317 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 HSPA12AO43301 675 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 TXNL1O43396 289 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 OR2F2O95006 317 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 CHATP28329 748 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 TALDO1P37837 337 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 REG1BP48304 166 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 CLDN12P56749 244 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 BLCAPP62952 87 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 C2orf68Q2NKX9 166 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 Q3ZCU0 254 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 ABCA11PQ4W5N1 156 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 PRR31Q5SQ13 230 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 UBE2UQ5VVX9 321 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 ZNF773Q6PK81 442 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 CCBE1Q6UXH8 406 aaPredicted RBP8.74□□□□□ -1.01
CLIP3-203ENST00000586457 THNSL2Q86YJ6 484 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 TGIF2LXQ8IUE1 241 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 LYG1Q8N1E2 194 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 C8orf31Q8N9H6 132 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 OR56B4Q8NH76 319 aa8.74□□□□□ -1.01
CLIP3-203ENST00000586457 OR1L1Q8NH94 360 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms